RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

5 rows where bioproject = "PRJNA859990" and tax_clade = "Amoebozoa"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 5 ✖

bioproject 1

  • PRJNA859990 · 5 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4674470 4674470 PRJNA859990_S_NODE_9184_length_333_cov_1.688462_g8923_i0 PRJNA859990 9184 333 1.688462 5.62257846 Entamoeba histolytica 5759 Evosea other_Eukaryota 182 3.84e-41   NTclustered gi|415339|emb|X65163.1| 5759 g8923 i0 91.111 202.627627627628 135 10 40 2 134 267 6205 6072 E.histolytica rRNA blastn 67475 182 1 Eukaryota Amoebozoa   Evosea   Mastigamoebida Entamoebidae Entamoeba Entamoeba histolytica
7614078 7614078 PRJNA859990_S_NODE_16106_length_261_cov_1.446809_g15845_i0 PRJNA859990 16106 261 1.446809 3.77617149 root 1 Root_unresolved Root_unresolved 472 1.54e-128   NTclustered gi|1057487664|gb|KX539393.1| 133408 g15845 i0 99.234 99.6360153256705 261 2 100 0 1 261 716 456 Acytostelium leptosomum strain FG12A RNA polymerase I (rpa1) gene, partial cds blastn 26005 472 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Acytostelium Acytostelium leptosomum
8498699 8498699 PRJNA859990_S_NODE_1107_length_810_cov_8.388060_g887_i0 PRJNA859990 1107 810 8.38806 67.943286 uncultured Amoebozoa 590481 Root_unresolved Root_unresolved 859 0   NTclustered gi|221185864|gb|FJ577811.1| 590481 g887 i0 89.076 29.9518518518519 714 48 94 21 124 810 1011 301 Uncultured Amoebozoa clone Ivry07 18S ribosomal RNA gene, partial sequence blastn 24261 859 1 Eukaryota Amoebozoa             uncultured Amoebozoa
8498779 8498779 PRJNA859990_S_NODE_17727_length_251_cov_1.780899_g17466_i0 PRJNA859990 17727 251 1.780899 4.47005649 Copromyxa sp. PKD 2011 1215977 Tubulinea other_Eukaryota 459 1.1499999999999996e-124   NTclustered gi|399764168|gb|JQ271679.1| 1215977 g17466 i0 99.602 72.4183266932271 251 1 100 0 1 251 365 115 Copromyxa sp. PKD 2011 strain ZEB4 18S ribosomal RNA gene, partial sequence blastn 18177 459 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa sp. PKD 2011
11439741 11439741 PRJNA859990_S_NODE_10129_length_319_cov_1.085366_g9868_i0 PRJNA859990 10129 319 1.085366 3.46231754 Vexillifera 218659 Root_unresolved Root_unresolved 268 2.7299999999999998e-67   NTclustered gi|221185864|gb|FJ577811.1| 590481 g9868 i0 92.105 43.4326018808777 190 15 60 0 67 256 1837 1648 Uncultured Amoebozoa clone Ivry07 18S ribosomal RNA gene, partial sequence blastn 13855 268 1 Eukaryota Amoebozoa             uncultured Amoebozoa

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;