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contig_metadata

18 rows where bioproject = "PRJNA857857" and tax_phylum = "Verrucomicrobiota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 18 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA857857 · 18 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13989758 13989758 PRJNA857857_P_NODE_9311_length_512_cov_1.227790_g8874_i0 PRJNA857857 9311 512 1.22779 6.2862848 Pseudomonadati 3379134 Bacteria Bacteria 251 6.12e-81   NR MEY3480008.1 2026799 g8874 i0 76.8 19.48828125 151 35 88.5 0 456 4 98 248 MEY3480008.1 Phosphoglycerate mutase 1 [Verrucomicrobiota bacterium] diamond 9978 251 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
19971895 19971895 PRJNA857857_P_NODE_45736_length_245_cov_0.895349_g45287_i0 PRJNA857857 45736 245 0.895349 2.19360505 Akkermansia massiliensis 2927224 Bacteria Bacteria 113 1e-20   NTclustered gi|2736739857|gb|CP156916.1| 2927224 g45287 i0 85.321 6.97551020408163 109 16 44 0 137 245 2449833 2449725 Akkermansia massiliensis strain Akk273 chromosome, complete genome blastn 1709 113 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Akkermansiaceae Akkermansia Akkermansia massiliensis
26897048 26897048 PRJNA857857_P_NODE_29181_length_286_cov_1.319249_g28732_i0 PRJNA857857 29181 286 1.319249 3.77305214 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 42.7 0.0433   NR MEI6341235.1 2026799 g28732 i0 42 0.524475524475524 50 27 50.3 1 157 14 109 158 MEI6341235.1 permease prefix domain 1-containing protein [Verrucomicrobiota bacterium] diamond 150 42.7 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
27149468 27149468 PRJNA857857_P_NODE_23322_length_323_cov_1.828000_g22873_i0 PRJNA857857 23322 323 1.828 5.90444 Luteolibacter marinus 2776705 Bacteria Bacteria 58.5 2.23e-7   NR WP_193215151.1 2776705 g22873 i0 61.4 1.65325077399381 44 14 40.9 1 134 3 5 45 WP_193215151.1 aldo/keto reductase [Luteolibacter marinus] diamond 534 58.5 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Luteolibacter Luteolibacter marinus
27308145 27308145 PRJNA857857_P_NODE_51103_length_241_cov_0.916667_g50654_i0 PRJNA857857 51103 241 0.916667 2.20916747 Akkermansiaceae bacterium 2562705 Bacteria Bacteria 166 5.27e-51   NR MFT6180689.1 2562705 g50654 i0 97.5 4.9792531120332 80 2 99.6 0 2 241 6 85 MFT6180689.1 dCMP deaminase [Akkermansiaceae bacterium] diamond 1200 166 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Akkermansiaceae   Akkermansiaceae bacterium
27750299 27750299 PRJNA857857_P_NODE_20564_length_345_cov_1.250000_g20115_i0 PRJNA857857 20564 345 1.25 4.3125 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 163 8.49e-49   NR MBN8246636.1 2026799 g20115 i0 71.8 3.88695652173913 110 30 95.7 1 10 339 8 116 MBN8246636.1 glutathione peroxidase [Verrucomicrobiota bacterium] diamond 1341 163 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
28326395 28326395 PRJNA857857_P_NODE_17006_length_381_cov_1.035714_g16559_i0 PRJNA857857 17006 381 1.035714 3.94607034 Pseudomonadati 3379134 Bacteria Bacteria 55.1 8.28e-6   NR HOX57815.1 2026799 g16559 i0 45 0.984251968503937 60 31 47.2 1 180 359 595 652 HOX57815.1 dihydrodipicolinate synthase family protein [Verrucomicrobiota bacterium] diamond 375 55.1 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
28413177 28413177 PRJNA857857_P_NODE_10446_length_486_cov_1.259080_g10006_i0 PRJNA857857 10446 486 1.25908 6.1191288 Verrucomicrobium sp. BvORR 72225 Bacteria Bacteria 57.4 3.66e-6   NR WP_050024832.1 1396418 g10006 i0 47.6 0.388888888888889 63 33 38.9 0 1 189 646 708 WP_050024832.1 protein kinase domain-containing protein [Verrucomicrobium sp. BvORR034] diamond 189 57.4 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Verrucomicrobium Verrucomicrobium sp. BvORR034
28737041 28737041 PRJNA857857_P_NODE_39147_length_250_cov_0.864407_g38698_i0 PRJNA857857 39147 250 0.864407 2.1610175 PVC group 1783257 Bacteria Bacteria 82.8 3.22e-16   NR MBX7209452.1 2026800 g38698 i0 47.6 2.988 82 43 98.4 0 246 1 443 524 MBX7209452.1 molecular chaperone HtpG [Verrucomicrobiaceae bacterium] diamond 747 83.6 0.990430622009569 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae   Verrucomicrobiaceae bacterium
28760337 28760337 PRJNA857857_P_NODE_46047_length_245_cov_0.895349_g45598_i0 PRJNA857857 46047 245 0.895349 2.19360505 Opitutia bacterium 2026771 Bacteria Bacteria 55.8 1.92e-7   NR MBT7853776.1 2026771 g45598 i0 74.2 1.2734693877551 31 8 38 0 95 3 36 66 MBT7853776.1 hypothetical protein [Opitutia bacterium] diamond 312 55.8 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia       Opitutia bacterium
29044769 29044769 PRJNA857857_P_NODE_23688_length_321_cov_0.983871_g23239_i0 PRJNA857857 23688 321 0.983871 3.15822591 Verrucomicrobiia bacterium 2499141 Bacteria Bacteria 111 5.57e-26   NR HTS19718.1 2499141 g23239 i0 52.4 0.981308411214953 105 50 98.1 0 317 3 227 331 HTS19718.1 glycoside hydrolase family 28 protein [Verrucomicrobiia bacterium] diamond 315 111 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       Verrucomicrobiia bacterium
29549584 29549584 PRJNA857857_P_NODE_22350_length_330_cov_2.392996_g21901_i0 PRJNA857857 22350 330 2.392996 7.8968868 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 82 1.41e-15   NR MFM2295308.1 2026799 g21901 i0 43.8 1.1 121 48 92.7 4 1 306 44 163 MFM2295308.1 hypothetical protein [Verrucomicrobiota bacterium] diamond 363 82 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
29707202 29707202 PRJNA857857_P_NODE_35390_length_256_cov_1.262295_g34941_i0 PRJNA857857 35390 256 1.262295 3.2314752 Candidatus Methylacidiphilales bacterium 2720631 Bacteria Bacteria 63.9 1.5e-9   NR HUB66648.1 2720631 g34941 i0 49.2 0.69140625 59 28 69.1 1 4 180 249 305 HUB66648.1 hypothetical protein [Candidatus Methylacidiphilales bacterium] diamond 177 63.9 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Methylacidiphilae Methylacidiphilales     Candidatus Methylacidiphilales bacterium
30348103 30348103 PRJNA857857_P_NODE_39852_length_249_cov_0.875000_g39403_i0 PRJNA857857 39852 249 0.875 2.17875 Pseudomonadati 3379134 Bacteria Bacteria 50.1 1.12e-4   NR AKC81624.1 1637999 g39403 i0 39.1 1.78313253012048 69 33 81.9 2 1 204 45 105 AKC81624.1 hypothetical protein IMCC26134_00465 [Verrucomicrobia bacterium IMCC26134] diamond 444 50.1 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobia bacterium IMCC26134
30371484 30371484 PRJNA857857_P_NODE_47132_length_244_cov_0.900585_g46683_i0 PRJNA857857 47132 244 0.900585 2.1974274 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 123 4.1e-32   NR MEI6781227.1 2026799 g46683 i0 74.1 3 81 21 99.6 0 243 1 103 183 MEI6781227.1 shikimate dehydrogenase [Verrucomicrobiota bacterium] diamond 732 123 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
30528924 30528924 PRJNA857857_P_NODE_22433_length_330_cov_1.194553_g21984_i0 PRJNA857857 22433 330 1.194553 3.9420249 Opitutus sp. 1913982 Bacteria Bacteria 129 5.41e-33   NR HWL14429.1 1913982 g21984 i0 58.8 2.78181818181818 102 42 92.7 0 23 328 94 195 HWL14429.1 glycoside hydrolase family 27 protein [Opitutus sp.] diamond 918 129 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Opitutus Opitutus sp.
32646990 32646990 PRJNA857857_P_NODE_39060_length_250_cov_0.870056_g38611_i0 PRJNA857857 39060 250 0.870056 2.17514 Akkermansiaceae bacterium 2562705 Bacteria Bacteria 46.6 0.00181   NR MDP4624182.1 2562705 g38611 i0 35.1 0.924 77 48 90 2 250 26 724 800 MDP4624182.1 carbohydrate-binding protein [Akkermansiaceae bacterium] diamond 231 46.6 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Akkermansiaceae   Akkermansiaceae bacterium
32899085 32899085 PRJNA857857_P_NODE_24800_length_313_cov_1.208333_g24351_i0 PRJNA857857 24800 313 1.208333 3.78208229 Pedosphaera sp. 2024890 Bacteria Bacteria 48.1 5.5e-4   NR MSU84020.1 2024890 g24351 i0 59.4 0.306709265175719 32 13 30.7 0 110 205 69 100 MSU84020.1 ankyrin repeat domain-containing protein [Pedosphaera sp.] diamond 96 48.1 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Pedosphaerae Pedosphaerales Pedosphaeraceae Pedosphaera Pedosphaera sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;