RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA857857", tax_kingdom = "Bacillati" and tax_phylum = "Mycoplasmatota"

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tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 2 ✖

tax_kingdom 1

  • Bacillati · 2 ✖

bioproject 1

  • PRJNA857857 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29612564 29612564 PRJNA857857_P_NODE_38510_length_250_cov_0.870056_g38061_i0 PRJNA857857 38510 250 0.870056 2.17514 Acholeplasma sp. 33015 Bacteria Bacteria 42.7 0.0403   NR HEY8405471.1 33015 g38061 i0 26.3 0.912 76 56 91.2 0 247 20 76 151 HEY8405471.1 FtsX-like permease family protein [Acholeplasma sp.] diamond 228 42.7 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Acholeplasmatales Acholeplasmataceae Acholeplasma Acholeplasma sp.
30403084 30403084 PRJNA857857_P_NODE_49613_length_242_cov_0.911243_g49164_i0 PRJNA857857 49613 242 0.911243 2.20520806 Candidatus Phytoplasma australasiaticum 2754999 Bacteria Bacteria 52 6.68e-7   NR MDV3198974.1 101513 g49164 i0 70.4 0.334710743801653 27 8 33.5 0 86 6 21 47 MDV3198974.1 hypothetical protein [Candidatus Phytoplasma australasiaticum subsp. ipomoeae] diamond 81 52 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Acholeplasmatales Acholeplasmataceae Candidatus Phytoplasma Candidatus Phytoplasma australasiaticum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;