RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA857857", tax_clade = "Stenosarchaea group" and tax_kingdom = "Methanobacteriati"

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analysis 2

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Methanobacteriati · 3 ✖

tax_clade 1

  • Stenosarchaea group · 3 ✖

bioproject 1

  • PRJNA857857 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6339494 6339494 PRJNA857857_P_NODE_20005_length_350_cov_1.364621_g19556_i0 PRJNA857857 20005 350 1.364621 4.7761735 Halococcus 2249 Archaea Archaea 641 1.5399999999999996e-179   NTclustered gi|288192|emb|X72588.1| 2250 g19556 i0 99.714 133.8 350 1 100 0 1 350 4230 4579 H.morrhuae ribosomal RNA operon and flanking regions blastn 46830 641 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Halococcaceae Halococcus Halococcus morrhuae
27623973 27623973 PRJNA857857_P_NODE_8044_length_548_cov_1.600000_g7615_i0 PRJNA857857 8044 548 1.6 8.768 Candidatus Alkanophagales archaeon 2971454 Archaea Archaea 89.4 1.12e-18   NR RLG36346.1 2971454 g7615 i0 38.3 1.17153284671533 107 64 58.6 2 323 3 23 127 RLG36346.1 MAG: protein phosphatase [Candidatus Alkanophagales archaeon] diamond 642 89.4 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Candidatus Alkanophagales     Candidatus Alkanophagales archaeon
27813450 27813450 PRJNA857857_P_NODE_28824_length_288_cov_1.074419_g28375_i0 PRJNA857857 28824 288 1.074419 3.09432672 Candidatus Methanoperedens sp. 2032688 Archaea Archaea 68.9 3.96e-11   NR MDP2767729.1 2032688 g28375 i0 45.1 0.947916666666667 91 46 94.8 2 11 283 575 661 MDP2767729.1 DUF4062 domain-containing protein [Candidatus Methanoperedens sp.] diamond 273 68.9 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Candidatus Methanoperedentaceae Candidatus Methanoperedens Candidatus Methanoperedens sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;