RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA857857", tax_clade = "Sar" and tax_phylum = "Cercozoa"

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tax_superkingdom 1

tax_phylum 1

  • Cercozoa · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA857857 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9772954 9772954 PRJNA857857_P_NODE_25288_length_309_cov_1.881356_g24839_i0 PRJNA857857 25288 309 1.881356 5.81339004 Esquamula lacrimiformis 1176540 SAR_Eukaryotes SAR_Eukaryotes 254 7.37e-63   NTclustered gi|409971369|dbj|AB714271.1| 1176540 g24839 i0 99.291 53.4045307443366 141 0 45 1 5 144 3698 3838 Esquamula lacrimiformis gene for 28S ribosomal RNA, partial sequence blastn 16502 254 1 Eukaryota Sar   Cercozoa Imbricatea Thaumatomonadida   Esquamula Esquamula lacrimiformis
12715082 12715082 PRJNA857857_P_NODE_20190_length_348_cov_1.690909_g19741_i0 PRJNA857857 20190 348 1.690909 5.88436332 Cercomonadidae 45108 SAR_Eukaryotes SAR_Eukaryotes 643 4.279999999999998e-180   NTclustered gi|1002343613|gb|KU738491.1| 175275 g19741 i0 100 97.5028735632184 348 0 100 0 1 348 25 372 Uncultured Cercozoa clone OTU_433 18S ribosomal RNA gene, partial sequence blastn 33931 643 1 Eukaryota Sar   Cercozoa         uncultured Cercozoa

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;