RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA857857", tax_clade = "PVC group" and tax_phylum = "Chlamydiota"

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tax_superkingdom 1

tax_phylum 1

  • Chlamydiota · 3 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 3 ✖

bioproject 1

  • PRJNA857857 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28294923 28294923 PRJNA857857_P_NODE_32166_length_271_cov_1.525253_g31717_i0 PRJNA857857 32166 271 1.525253 4.13343563 root 1 Root_unresolved Root_unresolved 70.9 9.65e-14   NR NDD59370.1 2081524 g31717 i0 67.2 1.97047970479705 61 19 67.5 1 16 198 13 72 NDD59370.1 30S ribosomal protein S21 [Chlamydiota bacterium] diamond 534 71.6 0.990223463687151 Bacteria PVC group Pseudomonadati Chlamydiota         Chlamydiota bacterium
28665832 28665832 PRJNA857857_P_NODE_43087_length_247_cov_0.885057_g42638_i0 PRJNA857857 43087 247 0.885057 2.18609079 Rhabdochlamydiaceae bacterium 2047756 Bacteria Bacteria 44.3 0.0112   NR HSW86126.1 2047756 g42638 i0 51.1 1.05668016194332 47 23 57.1 0 198 58 245 291 HSW86126.1 GMC oxidoreductase [Rhabdochlamydiaceae bacterium] diamond 261 44.3 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Candidatus Rhabdochlamydiaceae   Rhabdochlamydiaceae bacterium
29107828 29107828 PRJNA857857_P_NODE_24908_length_312_cov_1.288703_g24459_i0 PRJNA857857 24908 312 1.288703 4.02075336 Waddliaceae bacterium 2026802 Bacteria Bacteria 60.8 3.68e-8   NR MBB65797.1 2026802 g24459 i0 68.6 0.336538461538462 35 11 33.7 0 208 312 5 39 MBB65797.1 phosphoenolpyruvate carboxykinase (GTP) [Waddliaceae bacterium] diamond 105 60.8 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Waddliaceae   Waddliaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;