RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where bioproject = "PRJNA857857", tax_clade = "FCB group" and tax_phylum = "Fidelibacterota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Fidelibacterota · 2 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 2 ✖

bioproject 1

  • PRJNA857857 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28989866 28989866 PRJNA857857_P_NODE_27228_length_297_cov_1.218750_g26779_i0 PRJNA857857 27228 297 1.21875 3.6196875 Pseudomonadati 3379134 Bacteria Bacteria 80.5 3.88e-15   NR MCH7574119.1 2026760 g26779 i0 50 10.4848484848485 76 37 76.8 1 258 31 164 238 MCH7574119.1 S8 family peptidase [Fidelibacterota bacterium] diamond 3114 80.5 1 Bacteria FCB group Pseudomonadati Fidelibacterota         Fidelibacterota bacterium
32867700 32867700 PRJNA857857_P_NODE_2360_length_964_cov_1.355780_g2047_i0 PRJNA857857 2360 964 1.35578 13.0697192 Fidelibacterota bacterium 2026760 Bacteria Bacteria 273 7.38e-86   NR MDP6571221.1 2026760 g2047 i0 51.8 7.56224066390041 274 120 82.8 3 146 943 32 301 MDP6571221.1 DUF2817 domain-containing protein [Fidelibacterota bacterium] diamond 7290 273 1 Bacteria FCB group Pseudomonadati Fidelibacterota         Fidelibacterota bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;