RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA857857", tax_clade = "Bacteria candidate phyla" and tax_phylum = "Candidatus Rokuibacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Rokuibacteriota · 3 ✖

tax_clade 1

  • Bacteria candidate phyla · 3 ✖

bioproject 1

  • PRJNA857857 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3395950 3395950 PRJNA857857_P_NODE_41043_length_248_cov_0.880000_g40594_i0 PRJNA857857 41043 248 0.88 2.1824 Candidatus Rokuibacteriota bacterium 2053607 Bacteria Bacteria 143 4.23e-40   NR RPH83192.1 2053607 g40594 i0 85.4 0.991935483870968 82 12 99.2 0 246 1 62 143 RPH83192.1 MAG: ABC transporter ATP-binding protein [Candidatus Rokuibacteriota bacterium] diamond 246 143 1 Bacteria Bacteria candidate phyla   Candidatus Rokuibacteriota         Candidatus Rokuibacteriota bacterium
30474148 30474148 PRJNA857857_P_NODE_51153_length_241_cov_0.916667_g50704_i0 PRJNA857857 51153 241 0.916667 2.20916747 Bacteria 2 Bacteria Bacteria 97.1 1.2600000000000002e-21   NR OLD39868.1 1805354 g50704 i0 94.1 1.9045643153527 51 3 63.5 0 88 240 1 51 OLD39868.1 MAG: hypothetical protein AUI57_01610 [Candidatus Rokubacteria bacterium 13_1_40CM_2_68_8] diamond 459 97.1 1 Bacteria Bacteria candidate phyla   Candidatus Rokuibacteriota         Candidatus Rokubacteria bacterium 13_1_40CM_2_68_8
30623631 30623631 PRJNA857857_P_NODE_7933_length_551_cov_2.468619_g7505_i0 PRJNA857857 7933 551 2.468619 13.60209069 Candidatus Rokuibacteriota bacterium 2053607 Bacteria Bacteria 54.7 8.81e-6   NR PYN07531.1 2053607 g7505 i0 32.7 1.75317604355717 150 90 78.4 5 93 524 3 147 PYN07531.1 MAG: hypothetical protein DME02_11440 [Candidatus Rokuibacteriota bacterium] diamond 966 54.7 1 Bacteria Bacteria candidate phyla   Candidatus Rokuibacteriota         Candidatus Rokuibacteriota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;