RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

8 rows where bioproject = "PRJNA857143" and tax_phylum = "Negarnaviricota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Negarnaviricota · 8 ✖

tax_kingdom 1

bioproject 1

  • PRJNA857143 · 8 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2119617 2119617 PRJNA857143_S_NODE_562_length_1672_cov_43.841776_g431_i0 PRJNA857143 562 1672 43.841776 733.03449472 Recombinant vesicular stomatitis Indiana virus rVSV-G/GFP 582817 Viruses Viruses 2881 0   NTclustered gi|218457792|gb|FJ478454.1| 582817 g431 i0 100 92.9665071770335 1560 0 98 0 1 1560 3097 4656 Recombinant vesicular stomatitis Indiana virus rVSV-G/GFP, complete genome blastn 155440 2881 1 Viruses recombinant Vesiculovirus Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Rhabdoviridae Vesiculovirus Recombinant vesicular stomatitis Indiana virus rVSV-G/GFP
3787185 3787185 PRJNA857143_S_NODE_1063_length_1424_cov_186.178386_g850_i0 PRJNA857143 1063 1424 186.178386 2651.18021664 root 1 Root_unresolved Root_unresolved 2453 0   NTclustered gi|2232046819|gb|MW306665.1| 11276 g850 i0 99.85 93.559691011236 1335 0 94 2 66 1399 1384 51 Vesicular stomatitis virus isolate M Delta 51, complete genome blastn 133229 2453 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Rhabdoviridae Vesiculovirus Vesicular stomatitis virus
7613355 7613355 PRJNA857143_S_NODE_5486_length_840_cov_256.524120_g4721_i0 PRJNA857143 5486 840 256.52412 2154.802608 root 1 Root_unresolved Root_unresolved 1504 0   NTclustered gi|2649349941|gb|OR995580.1| 11276 g4721 i0 100 96.8952380952381 814 0 97 0 25 838 1323 2136 Mutant Vesicular stomatitis virus clone recombinant VSVdM51-RBD, complete genome blastn 81392 1504 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Rhabdoviridae Vesiculovirus Vesicular stomatitis virus
13989123 13989123 PRJNA857143_S_NODE_31631_length_457_cov_7.367188_g30539_i0 PRJNA857143 31631 457 7.367188 33.66804916 root 1 Root_unresolved Root_unresolved 845 0   NTclustered gi|61850|emb|X00939.1| 11276 g30539 i0 100 99.7855579868709 457 0 100 0 1 457 5916 6372 Vesicular Stomatitis Virus gene for polymerase (L) blastn 45602 845 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Rhabdoviridae Vesiculovirus Vesicular stomatitis virus
16537907 16537907 PRJNA857143_S_NODE_190973_length_243_cov_2.611765_g189880_i0 PRJNA857143 190973 243 2.611765 6.34658895 root 1 Root_unresolved Root_unresolved 449 6.65e-122   NTclustered gi|2649349941|gb|OR995580.1| 11276 g189880 i0 100 100 243 0 100 0 1 243 9660 9902 Mutant Vesicular stomatitis virus clone recombinant VSVdM51-RBD, complete genome blastn 24300 449 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Rhabdoviridae Vesiculovirus Vesicular stomatitis virus
16537917 16537917 PRJNA857143_S_NODE_23653_length_502_cov_4.911422_g22566_i0 PRJNA857143 23653 502 4.911422 24.65533844 root 1 Root_unresolved Root_unresolved 909 0   NTclustered gi|2232046819|gb|MW306665.1| 11276 g22566 i0 100 97.9163346613546 492 0 98 0 11 502 5351 4860 Vesicular stomatitis virus isolate M Delta 51, complete genome blastn 49154 909 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Rhabdoviridae Vesiculovirus Vesicular stomatitis virus
21637310 21637310 PRJNA857143_S_NODE_10997_length_656_cov_2.118353_g9991_i0 PRJNA857143 10997 656 2.118353 13.89639568 root 1 Root_unresolved Root_unresolved 1212 0   NTclustered gi|2612326376|gb|OR712768.1| 11276 g9991 i0 100 100 656 0 100 0 1 656 6973 6318 Vesicular stomatitis virus isolate CIPZB1-VSV-Indiana, complete genome blastn 65600 1212 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Rhabdoviridae Vesiculovirus Vesicular stomatitis virus
22913000 22913000 PRJNA857143_S_NODE_5058_length_866_cov_2.785624_g4307_i0 PRJNA857143 5058 866 2.785624 24.12350384 root 1 Root_unresolved Root_unresolved 1600 0   NTclustered gi|2649349941|gb|OR995580.1| 11276 g4307 i0 100 99.9976905311778 866 0 100 0 1 866 6968 6103 Mutant Vesicular stomatitis virus clone recombinant VSVdM51-RBD, complete genome blastn 86598 1600 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Rhabdoviridae Vesiculovirus Vesicular stomatitis virus

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;