RNAquarium Metadata Server
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contig_metadata

10 rows where bioproject = "PRJNA857143", tax_kingdom = "Orthornavirae" and tax_phylum = "Kitrinoviricota"

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tax_superkingdom 1

tax_phylum 1

  • Kitrinoviricota · 10 ✖

tax_kingdom 1

  • Orthornavirae · 10 ✖

bioproject 1

  • PRJNA857143 · 10 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
844039 844039 PRJNA857143_S_NODE_40581_length_422_cov_24.621777_g39489_i0 PRJNA857143 40581 422 24.621777 103.90389894 Jujube closterovirus 1 3043313 Viruses Viruses 54.7 0.011   NTclustered gi|2496749738|gb|OP673405.1| 3043313 g39489 i0 100 0.135071090047393 29 0 7 0 1 29 6 34 Jujube closterovirus 1 isolate AKS15-20, complete genome blastn 57 54.7 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Closteroviridae   Jujube closterovirus 1
3787181 3787181 PRJNA857143_S_NODE_100203_length_313_cov_1.350000_g99110_i0 PRJNA857143 100203 313 1.35 4.2255 Hepacivirus 11102 Viruses Viruses 108 6.16e-19   NTclustered gi|288815570|gb|GQ870502.1| 2847144 g99110 i0 92.105 24.2555910543131 76 6 24 0 238 313 539 464 Hepatitis C virus subtype 1a isolate 1/910 clone 2A3-49 polyprotein gene, partial cds blastn 7592 108 1 Viruses   Orthornavirae Kitrinoviricota Flasuviricetes Amarillovirales Flaviviridae Hepacivirus Hepacivirus hominis
5946074 5946074 PRJNA857143_S_NODE_102965_length_310_cov_1.223629_g101872_i0 PRJNA857143 102965 310 1.223629 3.7932499 Carlavirus latensdianthi 3427766 Viruses Viruses 54.7 0.008   NTclustered gi|1995060321|gb|MN450069.1| 12164 g101872 i0 100 0.454838709677419 29 0 9 0 1 29 13 41 Carnation latent virus isolate KL, complete genome blastn 141 54.7 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Betaflexiviridae Carlavirus Carlavirus latensdianthi
5946606 5946606 PRJNA857143_S_NODE_154765_length_263_cov_1.236842_g153672_i0 PRJNA857143 154765 263 1.236842 3.25289446 Hepacivirus hominis 3052230 Viruses Viruses 126 1.39e-24   NTclustered gi|557126858|gb|JQ061326.1| 3052230 g153672 i0 86.726 1.83269961977186 113 15 43 0 149 261 512 400 Hepatitis C virus isolate C003_E_2A3C4 from USA polyprotein (gp1) gene, partial cds; and nonfunctional protein F (gp2) gene, partial sequence blastn 482 126 1 Viruses   Orthornavirae Kitrinoviricota Flasuviricetes Amarillovirales Flaviviridae Hepacivirus Hepacivirus hominis
5946904 5946904 PRJNA857143_S_NODE_18165_length_548_cov_12.233684_g17094_i0 PRJNA857143 18165 548 12.233684 67.04058832 Jujube closterovirus 1 3043313 Viruses Viruses 54.7 0.015   NTclustered gi|2496749738|gb|OP673405.1| 3043313 g17094 i0 100 0.0529197080291971 29 0 5 0 520 548 34 6 Jujube closterovirus 1 isolate AKS15-20, complete genome blastn 29 54.7 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Closteroviridae   Jujube closterovirus 1
11439081 11439081 PRJNA857143_S_NODE_6829_length_779_cov_2.352691_g5971_i0 PRJNA857143 6829 779 2.352691 18.32746289 Hepacivirus 11102 Viruses Viruses 438 5.129999999999999e-118   NTclustered gi|212675038|gb|EU781799.1| 2847144 g5971 i0 86.352 82.2464698331194 403 54 52 1 356 757 666 264 Hepatitis C virus subtype 1a isolate 01-39, complete genome blastn 64070 440 0.995454545454545 Viruses   Orthornavirae Kitrinoviricota Flasuviricetes Amarillovirales Flaviviridae Hepacivirus Hepacivirus hominis
13598285 13598285 PRJNA857143_S_NODE_92671_length_322_cov_1.204819_g91578_i0 PRJNA857143 92671 322 1.204819 3.87951718 Hepacivirus hominis 3052230 Viruses Viruses 65.8 3.88e-6   NTclustered gi|190171155|gb|EU256104.1| 2847144 g91578 i0 90 1.22360248447205 50 5 16 0 6 55 747 796 Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V430/2005, complete genome blastn 394 65.8 1 Viruses   Orthornavirae Kitrinoviricota Flasuviricetes Amarillovirales Flaviviridae Hepacivirus Hepacivirus hominis
14871206 14871206 PRJNA857143_S_NODE_141452_length_273_cov_1.955000_g140359_i0 PRJNA857143 141452 273 1.955 5.33715 Carlavirus latensdianthi 3427766 Viruses Viruses 52.8 0.025   NTclustered gi|1995060321|gb|MN450069.1| 12164 g140359 i0 96.875 0.117216117216117 32 0 12 1 1 32 14 44 Carnation latent virus isolate KL, complete genome blastn 32 52.8 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Betaflexiviridae Carlavirus Carlavirus latensdianthi
19970366 19970366 PRJNA857143_S_NODE_194776_length_242_cov_0.923077_g193683_i0 PRJNA857143 194776 242 0.923077 2.23384634 Jujube closterovirus 1 3043313 Viruses Viruses 54.7 0.006   NTclustered gi|2496749738|gb|OP673405.1| 3043313 g193683 i0 100 0.235537190082645 29 0 12 0 1 29 6 34 Jujube closterovirus 1 isolate AKS15-20, complete genome blastn 57 54.7 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Closteroviridae   Jujube closterovirus 1
22520405 22520405 PRJNA857143_S_NODE_186858_length_245_cov_1.500000_g185765_i0 PRJNA857143 186858 245 1.5 3.675 Carlavirus latensdianthi 3427766 Viruses Viruses 56.5 0.002   NTclustered gi|1995060321|gb|MN450069.1| 12164 g185765 i0 100 0.579591836734694 30 0 12 0 1 30 13 42 Carnation latent virus isolate KL, complete genome blastn 142 56.5 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Betaflexiviridae Carlavirus Carlavirus latensdianthi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;