RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA857143", tax_kingdom = "Fungi" and tax_phylum = "Olpidiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Olpidiomycota · 3 ✖

tax_kingdom 1

  • Fungi · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA857143 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26841947 26841947 PRJNA857143_S_NODE_99461_length_314_cov_1.045643_g98368_i0 PRJNA857143 99461 314 1.045643 3.28331902 Eukaryota 2759 Fungi Fungi 50.4 1.58e-4   NR KAG5455985.1 278681 g98368 i0 58.8 1.04140127388535 34 14 32.5 0 287 186 142 175 KAG5455985.1 MAG: hypothetical protein BJ554DRAFT_4396, partial [Olpidium bornovanus] diamond 327 50.4 1 Eukaryota Opisthokonta Fungi Olpidiomycota Olpidiomycetes Olpidiales Olpidiaceae Olpidium Olpidium bornovanus
27971003 27971003 PRJNA857143_S_NODE_137705_length_276_cov_2.689655_g136612_i0 PRJNA857143 137705 276 2.689655 7.4234478 Olpidium bornovanus 278681 Fungi Fungi 54.7 1.32e-6   NR KAG5458113.1 278681 g136612 i0 46.3 1.23913043478261 67 31 72.8 2 17 217 83 144 KAG5458113.1 MAG: ribosomal protein S21e-domain-containing protein, partial [Olpidium bornovanus] diamond 342 54.7 1 Eukaryota Opisthokonta Fungi Olpidiomycota Olpidiomycetes Olpidiales Olpidiaceae Olpidium Olpidium bornovanus
28539636 28539636 PRJNA857143_S_NODE_49427_length_397_cov_4.540123_g48334_i0 PRJNA857143 49427 397 4.540123 18.02428831 Olpidium bornovanus 278681 Fungi Fungi 179 1.26e-50   NR BAL15351.1 278681 g48334 i0 62.6 1.97229219143577 131 49 99 0 395 3 140 270 BAL15351.1 translation elongation factor 2, partial [Olpidium bornovanus] diamond 783 179 1 Eukaryota Opisthokonta Fungi Olpidiomycota Olpidiomycetes Olpidiales Olpidiaceae Olpidium Olpidium bornovanus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;