RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA857143", tax_kingdom = "Bacillati" and tax_phylum = "Mycoplasmatota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 4 ✖

tax_kingdom 1

  • Bacillati · 4 ✖

bioproject 1

  • PRJNA857143 · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9771734 9771734 PRJNA857143_S_NODE_185648_length_246_cov_0.901734_g184555_i0 PRJNA857143 185648 246 0.901734 2.21826564 [Mycoplasma] phocae 142651 Bacteria Bacteria 182 2.72e-41   NTclustered gi|1432057116|gb|CP029295.1| 142651 g184555 i0 81.304 97.3414634146341 230 37 92 4 20 246 145145 145371 [Mycoplasma] phocae strain 105 chromosome, complete genome blastn 23946 182 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Metamycoplasma [Mycoplasma] phocae
19969780 19969780 PRJNA857143_S_NODE_140756_length_274_cov_1.164179_g139663_i0 PRJNA857143 140756 274 1.164179 3.18985046 [Mycoplasma] anseris 92400 Bacteria Bacteria 52.8 0.025   NTclustered gi|1417668539|gb|CP030140.1| 92400 g139663 i0 100 0.102189781021898 28 0 10 0 157 184 246547 246520 [Mycoplasma] anseris strain ATCC 49234 chromosome, complete genome blastn 28 52.8 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Metamycoplasma [Mycoplasma] anseris
27592347 27592347 PRJNA857143_S_NODE_171064_length_252_cov_1.307263_g169971_i0 PRJNA857143 171064 252 1.307263 3.29430276 Mycoplasma wenyonii 65123 Bacteria Bacteria 90.1 2.98e-21   NR WP_043911316.1 65123 g169971 i0 87.5 1.0952380952381 48 6 57.1 0 145 2 1 48 WP_043911316.1 50S ribosomal protein L21 [Mycoplasma wenyonii] diamond 276 90.1 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma wenyonii
29612558 29612558 PRJNA857143_S_NODE_66390_length_361_cov_1.861111_g65297_i0 PRJNA857143 66390 361 1.861111 6.71861071 Mesomycoplasma ovipneumoniae 29562 Bacteria Bacteria 45.4 0.0104   NR WP_069096602.1 29562 g65297 i0 45.5 0.972299168975069 44 22 34.9 1 359 234 170 213 WP_069096602.1 adenylate kinase family protein [Mesomycoplasma ovipneumoniae] diamond 351 45.4 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mesomycoplasma Mesomycoplasma ovipneumoniae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;