RNAquarium Metadata Server
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contig_metadata

1 row where bioproject = "PRJNA857143", tax_clade = "recombinant Vesiculovirus" and tax_kingdom = "Orthornavirae"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Orthornavirae · 1 ✖

tax_clade 1

  • recombinant Vesiculovirus · 1 ✖

bioproject 1

  • PRJNA857143 · 1 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2119617 2119617 PRJNA857143_S_NODE_562_length_1672_cov_43.841776_g431_i0 PRJNA857143 562 1672 43.841776 733.03449472 Recombinant vesicular stomatitis Indiana virus rVSV-G/GFP 582817 Viruses Viruses 2881 0   NTclustered gi|218457792|gb|FJ478454.1| 582817 g431 i0 100 92.9665071770335 1560 0 98 0 1 1560 3097 4656 Recombinant vesicular stomatitis Indiana virus rVSV-G/GFP, complete genome blastn 155440 2881 1 Viruses recombinant Vesiculovirus Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Rhabdoviridae Vesiculovirus Recombinant vesicular stomatitis Indiana virus rVSV-G/GFP

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;