RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA857143", tax_clade = "delta/epsilon subdivisions" and tax_superkingdom = "Bacteria"

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analysis 2

tax_superkingdom 1

  • Bacteria · 3 ✖

tax_clade 1

  • delta/epsilon subdivisions · 3 ✖

bioproject 1

  • PRJNA857143 · 3 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1235248 1235248 PRJNA857143_S_NODE_113041_length_299_cov_1.725664_g111948_i0 PRJNA857143 113041 299 1.725664 5.15973536 Myxococcota 2818505 Bacteria Bacteria 553 6.25e-153   NTclustered gi|391225826|gb|JQ861322.1| 34034 g111948 i0 100 100.652173913043 299 0 100 0 1 299 1096 1394 Uncultured delta proteobacterium clone JH100 16S ribosomal RNA gene, partial sequence blastn 30095 553 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
22520475 22520475 PRJNA857143_S_NODE_193818_length_242_cov_1.544379_g192725_i0 PRJNA857143 193818 242 1.544379 3.73739718 uncultured delta proteobacterium 34034 Bacteria Bacteria 254 5.57e-63   NTclustered gi|374854163|dbj|AP011765.1| 34034 g192725 i0 87.111 196.111570247934 225 28 93 1 1 225 14803 15026 Uncultured delta proteobacterium DNA, fosmid clone: JFF046_H12 blastn 47459 254 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
30181394 30181394 PRJNA857143_S_NODE_51852_length_391_cov_4.402516_g50759_i0 PRJNA857143 51852 391 4.402516 17.21383756 Deltaproteobacteria bacterium CG11_big_fil_rev_8_21_14_ 2026735 Bacteria Bacteria 57.4 1.26e-6   NR PIR17223.1 1973976 g50759 i0 51.3 1.64194373401535 39 19 29.9 0 382 266 316 354 PIR17223.1 MAG: hypothetical protein COV46_05190 [Deltaproteobacteria bacterium CG11_big_fil_rev_8_21_14_0_20_49_13] diamond 642 57.4 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium CG11_big_fil_rev_8_21_14_0_20_49_13

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;