RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA857143", tax_clade = "Methanomada group" and tax_phylum = "Methanobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Methanobacteriota · 2 ✖

tax_kingdom 1

tax_clade 1

  • Methanomada group · 2 ✖

bioproject 1

  • PRJNA857143 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26991566 26991566 PRJNA857143_S_NODE_155782_length_262_cov_1.650794_g154689_i0 PRJNA857143 155782 262 1.650794 4.32508028 Methanobacterium alkalithermotolerans 2731220 Archaea Archaea 61.6 1.03e-8   NR WP_211532742.1 2731220 g154689 i0 41.1 1.08778625954198 95 48 99.6 2 262 2 352 446 WP_211532742.1 glutamine synthetase family protein [Methanobacterium alkalithermotolerans] diamond 285 61.6 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium alkalithermotolerans
30789908 30789908 PRJNA857143_S_NODE_31894_length_456_cov_3.522193_g30802_i0 PRJNA857143 31894 456 3.522193 16.06120008 root 1 Root_unresolved Root_unresolved 55.8 3.85e-6   NR MTK63112.1 2164 g30802 i0 49.2 2.28289473684211 63 32 41.4 0 441 253 130 192 MTK63112.1 hypothetical protein [Methanobacterium sp.] diamond 1041 56.2 0.99288256227758 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;