RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA857143", tax_clade = "FCB group" and tax_phylum = "Fibrobacterota"

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tax_superkingdom 1

tax_phylum 1

  • Fibrobacterota · 3 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 3 ✖

bioproject 1

  • PRJNA857143 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27852857 27852857 PRJNA857143_S_NODE_112604_length_299_cov_4.442478_g111511_i0 PRJNA857143 112604 299 4.442478 13.28300922 Bacteria 2 Bacteria Bacteria 142 6.1e-39   NR NLD98947.1 35828 g111511 i0 91.5 15.6923076923077 71 6 71.2 0 296 84 283 353 NLD98947.1 type I glyceraldehyde-3-phosphate dehydrogenase [Fibrobacter sp.] diamond 4692 142 1 Bacteria FCB group Pseudomonadati Fibrobacterota Fibrobacteria Fibrobacterales Fibrobacteraceae Fibrobacter Fibrobacter sp.
29494785 29494785 PRJNA857143_S_NODE_67670_length_358_cov_15.898246_g66577_i0 PRJNA857143 67670 358 15.898246 56.91572068 Bacteria 2 Bacteria Bacteria 92.8 3.92e-19   NR WP_022636977.1 1505232 g66577 i0 85.4 13.7597765363128 48 7 40.2 0 353 210 852 899 WP_022636977.1 pyruvate, phosphate dikinase [Chitinivibrio alkaliphilus] diamond 4926 92.8 1 Bacteria FCB group Pseudomonadati Fibrobacterota Chitinivibrionia Chitinivibrionales Chitinivibrionaceae Chitinivibrio Chitinivibrio alkaliphilus
32300037 32300037 PRJNA857143_S_NODE_135919_length_278_cov_1.409756_g134826_i0 PRJNA857143 135919 278 1.409756 3.91912168 Fibrobacteraceae bacterium 2652288 Bacteria Bacteria 92 2.34e-19   NR MFA6622714.1 2652288 g134826 i0 74.1 1.85611510791367 54 14 58.3 0 38 199 453 506 MFA6622714.1 glutamine-hydrolyzing GMP synthase [Fibrobacteraceae bacterium] diamond 516 92 1 Bacteria FCB group Pseudomonadati Fibrobacterota Fibrobacteria Fibrobacterales Fibrobacteraceae   Fibrobacteraceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;