RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA857143", tax_clade = "FCB group" and tax_phylum = "Candidatus Hydrogenedentota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Hydrogenedentota · 3 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 3 ✖

bioproject 1

  • PRJNA857143 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27189540 27189540 PRJNA857143_S_NODE_118282_length_294_cov_1.411765_g117189_i0 PRJNA857143 118282 294 1.411765 4.1505891 Pseudomonadati 3379134 Bacteria Bacteria 92.4 8.44e-20   NR NLV43497.1 2030809 g117189 i0 49.4 1.8265306122449 87 43 88.8 1 292 32 252 337 NLV43497.1 alpha-mannosidase [Candidatus Hydrogenedentota bacterium] diamond 537 92.8 0.995689655172414 Bacteria FCB group Pseudomonadati Candidatus Hydrogenedentota         Candidatus Hydrogenedentota bacterium
28002850 28002850 PRJNA857143_S_NODE_52345_length_390_cov_2.690852_g51252_i0 PRJNA857143 52345 390 2.690852 10.4943228 Candidatus Hydrogenedentota bacterium 2030809 Bacteria Bacteria 89 1.27e-17   NR HPO15418.1 2030809 g51252 i0 54.1 1.75384615384615 74 34 56.9 0 386 165 628 701 HPO15418.1 alpha-galactosidase [Candidatus Hydrogenedentota bacterium] diamond 684 89 1 Bacteria FCB group Pseudomonadati Candidatus Hydrogenedentota         Candidatus Hydrogenedentota bacterium
29242222 29242222 PRJNA857143_S_NODE_147529_length_268_cov_3.430769_g146436_i0 PRJNA857143 147529 268 3.430769 9.19446092 Candidatus Hydrogenedens 1462415 Bacteria Bacteria 62.8 4.41e-9   NR MBW7864270.1 2030809 g146436 i0 50.7 2.26119402985075 67 32 73.9 1 250 53 423 489 MBW7864270.1 hypothetical protein [Candidatus Hydrogenedentota bacterium] diamond 606 62.8 1 Bacteria FCB group Pseudomonadati Candidatus Hydrogenedentota         Candidatus Hydrogenedentota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;