RNAquarium Metadata Server
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contig_metadata

9 rows where bioproject = "PRJNA857143" and tax_clade = "CRuMs"

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analysis 2

tax_superkingdom 1

tax_clade 1

  • CRuMs · 9 ✖

bioproject 1

  • PRJNA857143 · 9 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2119331 2119331 PRJNA857143_S_NODE_25562_length_490_cov_2.832134_g24473_i0 PRJNA857143 25562 490 2.832134 13.8774566 Diphylleia rotans 190327 Root_unresolved Root_unresolved 874 0   NTclustered gi|1016881912|ref|NC_029886.1| 190327 g24473 i0 100 56.8816326530612 473 0 97 0 18 490 16617 17089 Diphylleia rotans isolate NIES-3764 mitochondrion, complete genome blastn 27872 874 1 Eukaryota CRuMs         Collodictyonidae Diphylleia Diphylleia rotans
3395254 3395254 PRJNA857143_S_NODE_943_length_1476_cov_6.605132_g740_i0 PRJNA857143 943 1476 6.605132 97.49174832 Diphylleia rotans 190327 Root_unresolved Root_unresolved 2678 0   NTclustered gi|1016881912|ref|NC_029886.1| 190327 g740 i0 100 25.840108401084 1450 0 98 0 1 1450 44926 46375 Diphylleia rotans isolate NIES-3764 mitochondrion, complete genome blastn 38140 2678 1 Eukaryota CRuMs         Collodictyonidae Diphylleia Diphylleia rotans
9771502 9771502 PRJNA857143_S_NODE_165788_length_255_cov_1.285714_g164695_i0 PRJNA857143 165788 255 1.285714 3.2785707 Diphylleia rotans 190327 Root_unresolved Root_unresolved 472 1.5e-128   NTclustered gi|1016881912|ref|NC_029886.1| 190327 g164695 i0 100 91.4 255 0 100 0 1 255 17644 17390 Diphylleia rotans isolate NIES-3764 mitochondrion, complete genome blastn 23307 472 1 Eukaryota CRuMs         Collodictyonidae Diphylleia Diphylleia rotans
9771920 9771920 PRJNA857143_S_NODE_21968_length_515_cov_2.739819_g20882_i0 PRJNA857143 21968 515 2.739819 14.11006785 Diphylleia rotans 190327 Root_unresolved Root_unresolved 929 0   NTclustered gi|1016881912|ref|NC_029886.1| 190327 g20882 i0 99.225 34.9844660194175 516 2 100 2 1 515 49130 48616 Diphylleia rotans isolate NIES-3764 mitochondrion, complete genome blastn 18017 929 1 Eukaryota CRuMs         Collodictyonidae Diphylleia Diphylleia rotans
12322370 12322370 PRJNA857143_S_NODE_136270_length_278_cov_1.024390_g135177_i0 PRJNA857143 136270 278 1.02439 2.8478042 Diphylleia rotans 190327 Root_unresolved Root_unresolved 508 1.26e-139   NTclustered gi|1016881912|ref|NC_029886.1| 190327 g135177 i0 99.64 1 278 1 100 0 1 278 24414 24691 Diphylleia rotans isolate NIES-3764 mitochondrion, complete genome blastn 278 508 1 Eukaryota CRuMs         Collodictyonidae Diphylleia Diphylleia rotans
21246156 21246156 PRJNA857143_S_NODE_39737_length_425_cov_6.647727_g38645_i0 PRJNA857143 39737 425 6.647727 28.25283975 Diphylleia rotans 190327 Root_unresolved Root_unresolved 780 0   NTclustered gi|1016881912|ref|NC_029886.1| 190327 g38645 i0 99.765 70.0870588235294 425 1 100 0 1 425 44873 44449 Diphylleia rotans isolate NIES-3764 mitochondrion, complete genome blastn 29787 780 1 Eukaryota CRuMs         Collodictyonidae Diphylleia Diphylleia rotans
22519546 22519546 PRJNA857143_S_NODE_103738_length_309_cov_1.343220_g102645_i0 PRJNA857143 103738 309 1.34322 4.1505498 Diphylleia rotans 190327 Root_unresolved Root_unresolved 510 3.96e-140   NTclustered gi|1016881912|ref|NC_029886.1| 190327 g102645 i0 100 1.14239482200647 276 0 94 0 34 309 3040 2765 Diphylleia rotans isolate NIES-3764 mitochondrion, complete genome blastn 353 510 1 Eukaryota CRuMs         Collodictyonidae Diphylleia Diphylleia rotans
23796315 23796315 PRJNA857143_S_NODE_50599_length_394_cov_4.595016_g49506_i0 PRJNA857143 50599 394 4.595016 18.10436304 Diphylleia rotans 190327 Root_unresolved Root_unresolved 723 0   NTclustered gi|1016881912|ref|NC_029886.1| 190327 g49506 i0 100 0.99238578680203 391 0 99 0 4 394 26370 25980 Diphylleia rotans isolate NIES-3764 mitochondrion, complete genome blastn 391 723 1 Eukaryota CRuMs         Collodictyonidae Diphylleia Diphylleia rotans
30434561 30434561 PRJNA857143_S_NODE_173513_length_251_cov_1.252809_g172420_i0 PRJNA857143 173513 251 1.252809 3.14455059 Diphylleia rotans 190327 Root_unresolved Root_unresolved 79 7.31e-15   NR YP_009245579.1 190327 g172420 i0 43 1.02788844621514 86 41 93.2 1 234 1 505 590 YP_009245579.1 NADH dehydrogenase subunit 5 [Diphylleia rotans] diamond 258 79 1 Eukaryota CRuMs         Collodictyonidae Diphylleia Diphylleia rotans

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;