RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA857143", tax_clade = "Bacteria candidate phyla" and tax_phylum = "Minisyncoccota"

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tax_superkingdom 1

tax_phylum 1

  • Minisyncoccota · 3 ✖

tax_clade 1

  • Bacteria candidate phyla · 3 ✖

bioproject 1

  • PRJNA857143 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27844583 27844583 PRJNA857143_S_NODE_32504_length_453_cov_8.192105_g31412_i0 PRJNA857143 32504 453 8.192105 37.11023565 Minisyncoccota bacterium 2053589 Bacteria Bacteria 65.1 2.18e-10   NR MDR3570671.1 2053589 g31412 i0 41.8 0.649006622516556 98 49 60.3 2 2 274 6 102 MDR3570671.1 hypothetical protein [Candidatus Paceibacterota bacterium] diamond 294 65.1 1 Bacteria Bacteria candidate phyla   Minisyncoccota         Minisyncoccota bacterium
27876269 27876269 PRJNA857143_S_NODE_139605_length_275_cov_1.158416_g138512_i0 PRJNA857143 139605 275 1.158416 3.185644 Minisyncoccota bacterium 2053589 Bacteria Bacteria 66.6 2.08e-10   NR MCK4805808.1 2053589 g138512 i0 67.4 2.4 46 15 50.2 0 5 142 82 127 MCK4805808.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA [Candidatus Paceibacterota bacterium] diamond 660 66.6 1 Bacteria Bacteria candidate phyla   Minisyncoccota         Minisyncoccota bacterium
28507879 28507879 PRJNA857143_S_NODE_21927_length_515_cov_5.325792_g20841_i0 PRJNA857143 21927 515 5.325792 27.4278288 Minisyncoccota bacterium 2053589 Bacteria Bacteria 137 1.83e-34   NR MEZ0209285.1 2053589 g20841 i0 55.6 0.681553398058252 117 52 68.2 0 19 369 394 510 MEZ0209285.1 hypothetical protein [Candidatus Paceibacterota bacterium] diamond 351 137 1 Bacteria Bacteria candidate phyla   Minisyncoccota         Minisyncoccota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;