RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA855894" and tax_clade = "Metamonada"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Metamonada · 3 ✖

bioproject 1

  • PRJNA855894 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8495158 8495158 PRJNA855894_P_NODE_30587_length_249_cov_0.875000_g30465_i0 PRJNA855894 30587 249 0.875 2.17875 Histomonas meleagridis 135588 Parabasalia other_Eukaryota 278 3.42e-70   NTclustered gi|2794874462|ref|XM_067919450.1| 135588 g30465 i0 86.8 24.714859437751 250 31 100 2 1 249 15 263 Histomonas meleagridis cytoplasmic heat shock protein 70 (GO595_006131), partial mRNA blastn 6154 278 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Dientamoebidae Histomonas Histomonas meleagridis
19968593 19968593 PRJNA855894_P_NODE_22376_length_312_cov_1.288703_g22254_i0 PRJNA855894 22376 312 1.288703 4.02075336 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 294 4.39e-75   NTclustered gi|2806458306|ref|XM_068503481.1| 1144522 g22254 i0 84.932 1.61858974358974 292 42 93 2 1 291 480 190 Tritrichomonas foetus 60S ribosomal protein L7-2 (RPL7B), partial mRNA blastn 505 294 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus
25068411 25068411 PRJNA855894_P_NODE_32620_length_245_cov_0.895349_g32498_i0 PRJNA855894 32620 245 0.895349 2.19360505 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 291 4.3000000000000005e-74   NTclustered gi|2806463738|ref|XM_068505482.1| 1144522 g32498 i0 88.163 1 245 27 99 2 2 245 250 7 Tritrichomonas foetus 60S ribosomal protein L23 (RPL23), partial mRNA blastn 245 291 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;