RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA854078", tax_phylum = "Thermodesulfobacteriota" and tax_superkingdom = "Bacteria"

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tax_superkingdom 1

  • Bacteria · 3 ✖

tax_phylum 1

  • Thermodesulfobacteriota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA854078 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
19968179 19968179 PRJNA854078_P_NODE_10316_length_293_cov_1.400000_g10104_i0 PRJNA854078 10316 293 1.4 4.102 Desulfuromonadaceae bacterium 2099677 Bacteria Bacteria 117 1.98e-28   NR MBN2645185.1 2099677 g10104 i0 55.8 2.91808873720137 95 42 97.3 0 285 1 201 295 MBN2645185.1 adenosylhomocysteinase [Desulfuromonadaceae bacterium] diamond 855 117 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Desulfuromonadales Desulfuromonadaceae   Desulfuromonadaceae bacterium
27316299 27316299 PRJNA854078_P_NODE_14683_length_248_cov_1.731429_g14471_i0 PRJNA854078 14683 248 1.731429 4.29394392 Pseudomonadati 3379134 Bacteria Bacteria 58.9 7.92e-8   NR WP_176761219.1 91360 g14471 i0 50 2.90322580645161 60 30 72.6 0 183 4 615 674 WP_176761219.1 NAD-glutamate dehydrogenase domain-containing protein [Desulforhopalus singaporensis] diamond 720 58.9 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobulbia Desulfobulbales Desulfocapsaceae Desulforhopalus Desulforhopalus singaporensis
32836143 32836143 PRJNA854078_P_NODE_17100_length_226_cov_2.941176_g16888_i0 PRJNA854078 17100 226 2.941176 6.64705776 uncultured Desulfobulbus sp. 239745 Bacteria Bacteria 44.7 6.7e-4   NR WP_297956740.1 239745 g16888 i0 47.6 0.557522123893805 42 22 55.8 0 209 84 26 67 WP_297956740.1 hypothetical protein [uncultured Desulfobulbus sp.] diamond 126 44.7 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobulbia Desulfobulbales Desulfobulbaceae Desulfobulbus uncultured Desulfobulbus sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;