RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA854078" and tax_phylum = "Parabasalia"

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tax_superkingdom 1

tax_phylum 1

  • Parabasalia · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA854078 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
31413913 31413913 PRJNA854078_P_NODE_15516_length_245_cov_0.895349_g15304_i0 PRJNA854078 15516 245 0.895349 2.19360505 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 55.5 1.24e-6   NR XP_068364636.1 1144522 g15304 i0 49.1 4.35918367346939 53 27 64.9 0 218 60 362 414 XP_068364636.1 flagellar protofilament ribbon protein [Tritrichomonas foetus] diamond 1068 55.5 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus
32023131 32023131 PRJNA854078_P_NODE_4538_length_446_cov_1.541555_g4326_i0 PRJNA854078 4538 446 1.541555 6.8753353 root 1 Root_unresolved Root_unresolved 50.8 4.13e-4   NR XP_068369163.1 1144522 g4326 i0 28.8 1.41928251121076 125 70 76.7 3 396 55 262 378 XP_068369163.1 RAC family serine/threonine-protein kinase like protein [Tritrichomonas foetus] diamond 633 50.8 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;