RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA854078" and tax_phylum = "Bdellovibrionota"

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tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA854078 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28476243 28476243 PRJNA854078_P_NODE_14506_length_249_cov_0.977273_g14294_i0 PRJNA854078 14506 249 0.977273 2.43340977 Bacteriovoracia bacterium 3058048 Bacteria Bacteria 149 1.37e-39   NR MFP5385996.1 3058048 g14294 i0 90.2 0.987951807228916 82 8 98.8 0 2 247 1151 1232 MFP5385996.1 circularly permuted type 2 ATP-grasp protein [Bacteriovoracia bacterium] diamond 246 149 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia       Bacteriovoracia bacterium
30686827 30686827 PRJNA854078_P_NODE_12453_length_266_cov_4.284974_g12241_i0 PRJNA854078 12453 266 4.284974 11.39803084 Pseudobdellovibrionaceae bacterium 2026715 Bacteria Bacteria 47.4 0.00106   NR MCM2280480.1 2026715 g12241 i0 33.7 2.81954887218045 86 53 93.6 3 263 15 144 228 MCM2280480.1 trypsin-like serine protease [Pseudobdellovibrionaceae bacterium] diamond 750 47.4 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae   Pseudobdellovibrionaceae bacterium
30939883 30939883 PRJNA854078_P_NODE_15894_length_244_cov_0.877193_g15682_i0 PRJNA854078 15894 244 0.877193 2.14035092 Halobacteriovoraceae bacterium 2026745 Bacteria Bacteria 135 3.42e-39   NR MCB9093030.1 2026745 g15682 i0 84 0.922131147540984 75 12 92.2 0 226 2 1 75 MCB9093030.1 VRR-NUC domain-containing protein [Halobacteriovoraceae bacterium] diamond 225 135 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Halobacteriovoraceae   Halobacteriovoraceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;