RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJNA854078" and tax_phylum = "Apicomplexa"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA854078 · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
16537412 16537412 PRJNA854078_P_NODE_6233_length_378_cov_1.009836_g6021_i0 PRJNA854078 6233 378 1.009836 3.81718008 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 60.2 2.15e-4   NTclustered gi|915143536|ref|XM_013482534.1| 5804 g6021 i0 100 0.973544973544973 32 0 8 0 347 378 2461 2430 Eimeria maxima ATP-dependent RNA helicase, putative partial mRNA blastn 368 60.2 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Eimeriidae Eimeria Eimeria maxima
26801786 26801786 PRJNA854078_P_NODE_14761_length_248_cov_0.880000_g14549_i0 PRJNA854078 14761 248 0.88 2.1824 Cryptosporidium hominis 237895 SAR_Eukaryotes SAR_Eukaryotes 72.4 1.25e-12   NR PPA65540.1 237895 g14549 i0 42 0.979838709677419 81 46 98 1 5 247 292 371 PPA65540.1 Papain family cysteine protease family protein [Cryptosporidium hominis] diamond 243 72.4 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Cryptosporidiidae Cryptosporidium Cryptosporidium hominis
31002990 31002990 PRJNA854078_P_NODE_6074_length_383_cov_1.425806_g5862_i0 PRJNA854078 6074 383 1.425806 5.46083698 Babesia gibsoni 33632 SAR_Eukaryotes SAR_Eukaryotes 64.7 4.3e-10   NR KAK1443671.1 33632 g5862 i0 42.1 2.42819843342037 76 42 59.5 1 154 381 5 78 KAK1443671.1 glycogen phosphorylase B like protein [Babesia gibsoni] diamond 930 64.7 1 Eukaryota Sar   Apicomplexa Aconoidasida Piroplasmida Babesiidae Babesia Babesia gibsoni

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;