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contig_metadata

16 rows where bioproject = "PRJNA854078" and tax_phylum = "Actinomycetota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Actinomycetota · 16 ✖

tax_kingdom 1

bioproject 1

  • PRJNA854078 · 16 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2510325 2510325 PRJNA854078_P_NODE_16802_length_238_cov_2.836364_g16590_i0 PRJNA854078 16802 238 2.836364 6.75054632 Corynebacterium 1716 Bacteria Bacteria 440 3.899999999999999e-119   NTclustered gi|1540233514|emb|LR134504.1| 43768 g16590 i0 100 103 238 0 100 0 1 238 522341 522104 Corynebacterium matruchotii strain NCTC10206 genome assembly, chromosome: 1 blastn 24514 440 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium matruchotii
3392376 3392376 PRJNA854078_P_NODE_16683_length_241_cov_0.916667_g16471_i0 PRJNA854078 16683 241 0.916667 2.20916747 Corynebacterium marquesiae 2913503 Bacteria Bacteria 412 8.64e-111   NTclustered gi|2869847307|gb|CP175787.1| 2913503 g16471 i0 97.51 13.0580912863071 241 6 100 0 1 241 372995 372755 Corynebacterium marquesiae strain YSMAA1_1_H4 chromosome, complete genome blastn 3147 412 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium marquesiae
5944962 5944962 PRJNA854078_P_NODE_9885_length_299_cov_1.831858_g9673_i0 PRJNA854078 9885 299 1.831858 5.47725542 Corynebacterium matruchotii 43768 Bacteria Bacteria 553 6.25e-153   NTclustered gi|1540233514|emb|LR134504.1| 43768 g9673 i0 100 389.501672240803 299 0 100 0 1 299 519491 519193 Corynebacterium matruchotii strain NCTC10206 genome assembly, chromosome: 1 blastn 116461 553 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium matruchotii
7612778 7612778 PRJNA854078_P_NODE_10226_length_294_cov_1.393665_g10014_i0 PRJNA854078 10226 294 1.393665 4.0973751 Actinomyces 1654 Bacteria Bacteria 481 2.94e-131   NTclustered gi|2219514734|dbj|AP025697.1| 1655 g10014 i0 96.271 249.119047619048 295 8 100 3 1 294 486949 486657 Actinomyces naeslundii ATCC 27039 DNA, complete genome blastn 73241 481 1 Bacteria   Bacillati Actinomycetota Actinomycetes Actinomycetales Actinomycetaceae Actinomyces Actinomyces naeslundii
12714349 12714349 PRJNA854078_P_NODE_16390_length_242_cov_0.911243_g16178_i0 PRJNA854078 16390 242 0.911243 2.20520806 Cutibacterium 1912216 Bacteria Bacteria 436 5.1499999999999985e-118   NTclustered gi|1446500593|gb|CP031442.1| 1747 g16178 i0 99.174 51 242 2 100 0 1 242 617633 617392 Cutibacterium acnes strain KCOM 1315 chromosome, complete genome blastn 12342 436 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Cutibacterium Cutibacterium acnes
19086305 19086305 PRJNA854078_P_NODE_15815_length_244_cov_0.900585_g15603_i0 PRJNA854078 15815 244 0.900585 2.1974274 Cutibacterium 1912216 Bacteria Bacteria 451 1.86e-122   NTclustered gi|1446500593|gb|CP031442.1| 1747 g15603 i0 100 53.9631147540984 244 0 100 0 1 244 1634685 1634928 Cutibacterium acnes strain KCOM 1315 chromosome, complete genome blastn 13167 451 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Cutibacterium Cutibacterium acnes
19086306 19086306 PRJNA854078_P_NODE_16595_length_241_cov_0.916667_g16383_i0 PRJNA854078 16595 241 0.916667 2.20916747 Rothia 32207 Bacteria Bacteria 313 9.01e-81   NTclustered gi|1247210625|gb|CP023510.1| 43675 g16383 i0 90.083 5.79668049792531 242 22 100 2 1 241 1722642 1722882 Rothia mucilaginosa strain FDAARGOS_369 chromosome, complete genome blastn 1397 313 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Rothia Rothia mucilaginosa
20361111 20361111 PRJNA854078_P_NODE_4396_length_453_cov_1.784211_g4184_i0 PRJNA854078 4396 453 1.784211 8.08247583 Pseudarthrobacter 1742993 Bacteria Bacteria 54.7 0.012   NTclustered gi|1695528078|gb|CP041187.1| 2590774 g4184 i0 100 0.1280353200883 29 0 6 0 381 409 1838926 1838954 Pseudarthrobacter sp. NIBRBAC000502771 chromosome, complete genome blastn 58 54.7 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Pseudarthrobacter Pseudarthrobacter sp. NIBRBAC000502771
27442739 27442739 PRJNA854078_P_NODE_43_length_3600_cov_10.246952_g33_i0 PRJNA854078 43 3600 10.246952 368.890272 Bacillati 1783272 Bacteria Bacteria 106 5.57e-19   NR WP_307859796.1 547056 g33 i0 31.1 1.65083333333333 460 290 37.1 16 2848 1514 202 649 WP_307859796.1 fibronectin type III domain-containing protein [Actinokineospora baliensis] diamond 5943 106 1 Bacteria   Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Actinokineospora Actinokineospora baliensis
28570860 28570860 PRJNA854078_P_NODE_47_length_3553_cov_8.945977_g33_i1 PRJNA854078 47 3553 8.945977 317.85056281 Actinokineospora baliensis 547056 Bacteria Bacteria 105 1.24e-18   NR WP_307859796.1 547056 g33 i1 30.9 1.0520686743597 460 291 37.6 16 2848 1514 202 649 WP_307859796.1 fibronectin type III domain-containing protein [Actinokineospora baliensis] diamond 3738 105 1 Bacteria   Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Actinokineospora Actinokineospora baliensis
29052874 29052874 PRJNA854078_P_NODE_468_length_1354_cov_1.722092_g364_i0 PRJNA854078 468 1354 1.722092 23.31712568 root 1 Root_unresolved Root_unresolved 80.5 6.37e-12   NR WP_253878436.1 559627 g364 i0 26.3 1.44903988183161 407 267 87.7 13 1237 50 410 794 WP_253878436.1 fibronectin type III domain-containing protein [Actinomadura rupiterrae] diamond 1962 80.5 1 Bacteria   Bacillati Actinomycetota Actinomycetes Streptosporangiales Thermomonosporaceae Actinomadura Actinomadura rupiterrae
29675693 29675693 PRJNA854078_P_NODE_1470_length_789_cov_3.709497_g1282_i0 PRJNA854078 1470 789 3.709497 29.26793133 Microbacterium sp. CIAB417 2860287 Bacteria Bacteria 59.7 5.3e-6   NR WP_243226804.1 2860287 g1282 i0 28.9 0.749049429657795 197 126 71.1 7 612 52 1509 1701 WP_243226804.1 fibronectin type III domain-containing protein [Microbacterium sp. CIAB417] diamond 591 59.7 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium Microbacterium sp. CIAB417
30813290 30813290 PRJNA854078_P_NODE_12954_length_261_cov_1.611702_g12742_i0 PRJNA854078 12954 261 1.611702 4.20654222 Amycolatopsis 1813 Bacteria Bacteria 50.1 8.68e-5   NR WP_067584438.1 1813 g12742 i0 34.9 0.954022988505747 83 45 95.4 2 10 258 124 197 WP_067584438.1 MULTISPECIES: S1 family peptidase [Amycolatopsis] diamond 249 50.1 1 Bacteria   Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Amycolatopsis  
31223898 31223898 PRJNA854078_P_NODE_11815_length_274_cov_1.532338_g11603_i0 PRJNA854078 11815 274 1.532338 4.19860612 Coriobacteriia bacterium 2052159 Bacteria Bacteria 43.1 0.0368   NR HSK46834.1 2052159 g11603 i0 36.7 0.536496350364963 49 31 53.6 0 179 33 12 60 HSK46834.1 GAF domain-containing protein [Coriobacteriia bacterium] diamond 147 43.1 1 Bacteria   Bacillati Actinomycetota Coriobacteriia       Coriobacteriia bacterium
31920008 31920008 PRJNA854078_P_NODE_7897_length_335_cov_0.862595_g7685_i0 PRJNA854078 7897 335 0.862595 2.88969325 Streptomyces chartreusis NRRL 3882 1079985 Bacteria Bacteria 50.4 1.89e-4   NR SOR82164.1 1079985 g7685 i0 46.8 0.68955223880597 77 28 61.8 4 325 119 125 196 SOR82164.1 hypothetical protein SCNRRL3882_5616 [Streptomyces chartreusis NRRL 3882] diamond 231 50.4 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces chartreusis
32308164 32308164 PRJNA854078_P_NODE_59_length_3408_cov_10.503148_g33_i2 PRJNA854078 59 3408 10.503148 357.94728384 Bacillati 1783272 Bacteria Bacteria 106 5.09e-19   NR WP_307859796.1 547056 g33 i2 31.1 1.74383802816901 460 290 39.2 16 561 1895 202 649 WP_307859796.1 fibronectin type III domain-containing protein [Actinokineospora baliensis] diamond 5943 106 1 Bacteria   Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Actinokineospora Actinokineospora baliensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;