RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA854078", tax_kingdom = "Pseudomonadati" and tax_phylum = "Spirochaetota"

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tax_superkingdom 1

tax_phylum 1

  • Spirochaetota · 2 ✖

tax_kingdom 1

  • Pseudomonadati · 2 ✖

bioproject 1

  • PRJNA854078 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7219796 7219796 PRJNA854078_P_NODE_10586_length_289_cov_1.625000_g10374_i0 PRJNA854078 10586 289 1.625 4.69625 Brachyspira intermedia 84377 Bacteria Bacteria 52.8 0.027   NTclustered gi|343385146|gb|CP002874.1| 1045858 g10374 i0 100 0.0968858131487889 28 0 10 0 206 233 787409 787382 Brachyspira intermedia PWS/A, complete genome blastn 28 52.8 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Brachyspirales Brachyspiraceae Brachyspira Brachyspira intermedia
10163281 10163281 PRJNA854078_P_NODE_4028_length_473_cov_2.410000_g3816_i0 PRJNA854078 4028 473 2.41 11.3993 Borreliella 64895 Bacteria Bacteria 58.4 0.001   NTclustered gi|52696539|gb|AY722918.2| 290434 g3816 i0 94.737 0.321353065539112 38 1 8 1 55 92 5451 5415 Borrelia garinii PBi variable plasmid segment G11a17h03.s1, WORKING DRAFT SEQUENCE blastn 152 58.4 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Borreliaceae Borreliella Borreliella bavariensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;