RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

14 rows where bioproject = "PRJNA854078", tax_kingdom = "Metazoa" and tax_phylum = "Brachiopoda"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Brachiopoda · 14 ✖

tax_kingdom 1

  • Metazoa · 14 ✖

tax_clade 1

bioproject 1

  • PRJNA854078 · 14 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7219894 7219894 PRJNA854078_P_NODE_5526_length_402_cov_10.346505_g5314_i0 PRJNA854078 5526 402 10.346505 41.5929501 Metazoa 33208 Brachiopoda other_Eukaryota 230 1.73e-74   NR XP_013395382.2 7574 g5314 i0 93.5 61.4477611940299 123 8 91.8 0 2 370 89 211 XP_013395382.2 ubiquitin-60S ribosomal protein L40 [Lingula anatina] diamond 24702 232 0.991379310344828 Eukaryota Opisthokonta Metazoa Brachiopoda Lingulata Lingulida Lingulidae Lingula Lingula anatina
25067806 25067806 PRJNA854078_P_NODE_3620_length_499_cov_2.492958_g3408_i0 PRJNA854078 3620 499 2.492958 12.43986042 Metazoa 33208 Brachiopoda other_Eukaryota 309 8.49e-100   NR XP_013399710.1 7574 g3408 i0 92.2 150.673346693387 166 13 99.8 0 499 2 273 438 XP_013399710.1 V-type proton ATPase catalytic subunit A [Lingula anatina] diamond 75186 309 1 Eukaryota Opisthokonta Metazoa Brachiopoda Lingulata Lingulida Lingulidae Lingula Lingula anatina
27623933 27623933 PRJNA854078_P_NODE_5184_length_416_cov_1.591837_g4972_i0 PRJNA854078 5184 416 1.591837 6.62204192 Lingula anatina 7574 Brachiopoda other_Eukaryota 144 7.78e-39   NR XP_013399318.1 7574 g4972 i0 52.3 2.73317307692308 128 59 92.3 1 416 33 215 340 XP_013399318.1 ribonuclease H1 [Lingula anatina] diamond 1137 144 1 Eukaryota Opisthokonta Metazoa Brachiopoda Lingulata Lingulida Lingulidae Lingula Lingula anatina
27907617 27907617 PRJNA854078_P_NODE_7045_length_355_cov_1.854610_g6833_i0 PRJNA854078 7045 355 1.85461 6.5838655 Lingula anatina 7574 Brachiopoda other_Eukaryota 76.3 2.31e-13   NR XP_013393255.1 7574 g6833 i0 38.2 1.8 110 67 93 1 330 1 3 111 XP_013393255.1 lysosome membrane protein 2 [Lingula anatina] diamond 639 76.3 1 Eukaryota Opisthokonta Metazoa Brachiopoda Lingulata Lingulida Lingulidae Lingula Lingula anatina
28349897 28349897 PRJNA854078_P_NODE_5226_length_414_cov_2.395894_g5014_i0 PRJNA854078 5226 414 2.395894 9.91900116 Lingula anatina 7574 Brachiopoda other_Eukaryota 73.9 8.09e-13   NR XP_013384316.1 7574 g5014 i0 33.3 1 138 88 97.1 2 414 13 16 153 XP_013384316.1 surfeit locus protein 2 [Lingula anatina] diamond 414 73.9 1 Eukaryota Opisthokonta Metazoa Brachiopoda Lingulata Lingulida Lingulidae Lingula Lingula anatina
29391971 29391971 PRJNA854078_P_NODE_16589_length_241_cov_0.916667_g16377_i0 PRJNA854078 16589 241 0.916667 2.20916747 Novocrania anomala 317945 Brachiopoda other_Eukaryota 43.9 0.0145   NR QUP08111.1 317945 g16377 i0 48.6 2.73858921161826 37 19 46.1 0 2 112 146 182 QUP08111.1 fibroblast growth factor receptor 1, partial [Novocrania anomala] diamond 660 43.9 1 Eukaryota Opisthokonta Metazoa Brachiopoda Craniata Craniida Craniidae Novocrania Novocrania anomala
29612540 29612540 PRJNA854078_P_NODE_670_length_1171_cov_1.834244_g541_i0 PRJNA854078 670 1171 1.834244 21.47899724 Lingula anatina 7574 Brachiopoda other_Eukaryota 136 6.599999999999998e-32   NR XP_013414821.1 7574 g541 i0 30.9 0.763450042698548 298 168 74.3 9 872 3 126 393 XP_013414821.1 uncharacterized protein LOC106176828 isoform X1 [Lingula anatina] diamond 894 136 1 Eukaryota Opisthokonta Metazoa Brachiopoda Lingulata Lingulida Lingulidae Lingula Lingula anatina
30600241 30600241 PRJNA854078_P_NODE_1973_length_683_cov_2.536066_g1772_i0 PRJNA854078 1973 683 2.536066 17.32133078 Metazoa 33208 Brachiopoda other_Eukaryota 224 8.27e-64   NR XP_013383194.1 7574 g1772 i0 49.8 4.9194729136164 227 110 98.8 3 7 681 703 927 XP_013383194.1 AP-1 complex subunit beta-1 isoform X1 [Lingula anatina] diamond 3360 225 0.995555555555556 Eukaryota Opisthokonta Metazoa Brachiopoda Lingulata Lingulida Lingulidae Lingula Lingula anatina
31105746 31105746 PRJNA854078_P_NODE_1675_length_737_cov_2.233434_g1481_i0 PRJNA854078 1675 737 2.233434 16.46040858 Metazoa 33208 Brachiopoda other_Eukaryota 314 1.7899999999999995e-101   NR XP_013419828.1 7574 g1481 i0 62.7 4.90094979647218 244 89 98.9 2 6 734 36 278 XP_013419828.1 alanine aminotransferase 1 [Lingula anatina] diamond 3612 314 1 Eukaryota Opisthokonta Metazoa Brachiopoda Lingulata Lingulida Lingulidae Lingula Lingula anatina
31327112 31327112 PRJNA854078_P_NODE_2655_length_585_cov_3.322266_g2447_i0 PRJNA854078 2655 585 3.322266 19.4352561 Metazoa 33208 Brachiopoda other_Eukaryota 87.4 2.6e-16   NR XP_013414821.1 7574 g2447 i0 39 1.28717948717949 118 63 59 4 230 574 126 237 XP_013414821.1 uncharacterized protein LOC106176828 isoform X1 [Lingula anatina] diamond 753 87.4 1 Eukaryota Opisthokonta Metazoa Brachiopoda Lingulata Lingulida Lingulidae Lingula Lingula anatina
31477317 31477317 PRJNA854078_P_NODE_5236_length_414_cov_0.903226_g5024_i0 PRJNA854078 5236 414 0.903226 3.73935564 Lingula anatina 7574 Brachiopoda other_Eukaryota 212 2.97e-65   NR XP_013416642.1 7574 g5024 i0 73.7 2.95652173913043 137 36 99.3 0 3 413 54 190 XP_013416642.1 uroporphyrinogen decarboxylase [Lingula anatina] diamond 1224 212 1 Eukaryota Opisthokonta Metazoa Brachiopoda Lingulata Lingulida Lingulidae Lingula Lingula anatina
32276423 32276423 PRJNA854078_P_NODE_10898_length_285_cov_1.952830_g10686_i0 PRJNA854078 10898 285 1.95283 5.5655655 Metazoa 33208 Brachiopoda other_Eukaryota 101 4.4599999999999996e-23   NR XP_013382053.1 7574 g10686 i0 51.1 12.8842105263158 94 45 98.9 1 3 284 204 296 XP_013382053.1 mitogen-activated protein kinase 14 [Lingula anatina] diamond 3672 101 1 Eukaryota Opisthokonta Metazoa Brachiopoda Lingulata Lingulida Lingulidae Lingula Lingula anatina
32339706 32339706 PRJNA854078_P_NODE_8279_length_327_cov_1.515748_g8067_i0 PRJNA854078 8279 327 1.515748 4.95649596 Metazoa 33208 Brachiopoda other_Eukaryota 54.7 6.46e-6   NR XP_013418896.1 7574 g8067 i0 38.6 1.86238532110092 101 42 83.5 5 286 14 97 187 XP_013418896.1 phospholipase D2 [Lingula anatina] diamond 609 54.7 1 Eukaryota Opisthokonta Metazoa Brachiopoda Lingulata Lingulida Lingulidae Lingula Lingula anatina
32615831 32615831 PRJNA854078_P_NODE_6420_length_372_cov_1.411371_g6208_i0 PRJNA854078 6420 372 1.411371 5.25030012 Lingula anatina 7574 Brachiopoda other_Eukaryota 62 1.32e-9   NR XP_013408695.1 7574 g6208 i0 38.3 2.60483870967742 81 46 65.3 1 370 128 30 106 XP_013408695.1 SH3 domain-binding glutamic acid-rich-like protein 3 isoform X2 [Lingula anatina] diamond 969 62 1 Eukaryota Opisthokonta Metazoa Brachiopoda Lingulata Lingulida Lingulidae Lingula Lingula anatina

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;