RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA854078", tax_kingdom = "Bacillati" and tax_phylum = "Chloroflexota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Chloroflexota · 3 ✖

tax_kingdom 1

  • Bacillati · 3 ✖

bioproject 1

  • PRJNA854078 · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
841657 841657 PRJNA854078_P_NODE_13341_length_257_cov_1.673913_g13129_i0 PRJNA854078 13341 257 1.673913 4.30195641 Herpetosiphon aurantiacus 65 Bacteria Bacteria 128 3.78e-25   NTclustered gi|159889572|gb|CP000875.1| 316274 g13129 i0 85.714 0.490272373540856 126 12 48 4 52 174 2122126 2122004 Herpetosiphon aurantiacus DSM 785, complete genome blastn 126 128 1 Bacteria   Bacillati Chloroflexota Chloroflexia Herpetosiphonales Herpetosiphonaceae Herpetosiphon Herpetosiphon aurantiacus
28191809 28191809 PRJNA854078_P_NODE_6606_length_367_cov_1.309524_g6394_i0 PRJNA854078 6606 367 1.309524 4.80595308 Anaerolineales bacterium 2073117 Bacteria Bacteria 45.4 0.0149   NR MFP4345831.1 2073117 g6394 i0 45.5 0.874659400544959 55 29 45 1 61 225 86 139 MFP4345831.1 LysM peptidoglycan-binding domain-containing protein [Anaerolineales bacterium] diamond 321 45.4 1 Bacteria   Bacillati Chloroflexota Anaerolineae Anaerolineales     Anaerolineales bacterium
32804671 32804671 PRJNA854078_P_NODE_16320_length_242_cov_0.911243_g16108_i0 PRJNA854078 16320 242 0.911243 2.20520806 Herpetosiphon sp. 71864 Bacteria Bacteria 70.9 4.39e-14   NR WP_012189556.1 71864 g16108 i0 88.9 0.446280991735537 36 4 44.6 0 240 133 38 73 WP_012189556.1 DUF4287 domain-containing protein [Herpetosiphon sp.] diamond 108 70.9 1 Bacteria   Bacillati Chloroflexota Chloroflexia Herpetosiphonales Herpetosiphonaceae Herpetosiphon Herpetosiphon sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;