RNAquarium Metadata Server
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contig_metadata

7 rows where bioproject = "PRJNA854078" and tax_clade = "PVC group"

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analysis 2

tax_superkingdom 1

tax_kingdom 1

tax_clade 1

  • PVC group · 7 ✖

bioproject 1

  • PRJNA854078 · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3392407 3392407 PRJNA854078_P_NODE_4343_length_456_cov_1.697128_g4131_i0 PRJNA854078 4343 456 1.697128 7.73890368 uncultured Planctomycetaceae bacterium 100233 Bacteria Bacteria 52.8 0.044   NTclustered gi|2874253903|emb|OY970228.1| 100233 g4131 i0 100 0.0614035087719298 28 0 6 0 303 330 2343952 2343979 MAG: uncultured Planctomycetaceae bacterium isolate MFD00731.bin.c.1 genome assembly, chromosome: 1 blastn 28 52.8 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Planctomycetales Planctomycetaceae   uncultured Planctomycetaceae bacterium
26611681 26611681 PRJNA854078_P_NODE_15521_length_245_cov_0.895349_g15309_i0 PRJNA854078 15521 245 0.895349 2.19360505 Luteolibacter sp. 1962973 Bacteria Bacteria 48.9 2.59e-4   NR MEO8614526.1 1962973 g15309 i0 43.5 3.22040816326531 62 23 64.9 3 240 82 616 674 MEO8614526.1 ELWxxDGT repeat protein [Luteolibacter sp.] diamond 789 48.9 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Luteolibacter Luteolibacter sp.
28223460 28223460 PRJNA854078_P_NODE_2146_length_652_cov_7.006908_g1945_i0 PRJNA854078 2146 652 7.006908 45.68504016 Thermoguttaceae bacterium 2691551 Bacteria Bacteria 53.9 1.98e-4   NR MBQ9372032.1 2691551 g1945 i0 39.7 0.335889570552147 73 43 33.6 1 611 393 968 1039 MBQ9372032.1 fibronectin type III domain-containing protein [Thermoguttaceae bacterium] diamond 219 53.9 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Pirellulales Thermoguttaceae   Thermoguttaceae bacterium
28255081 28255081 PRJNA854078_P_NODE_16046_length_243_cov_0.905882_g15834_i0 PRJNA854078 16046 243 0.905882 2.20129326 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 102 2.39e-23   NR MFM8359275.1 2026799 g15834 i0 60 1.85185185185185 75 30 92.6 0 1 225 5 79 MFM8359275.1 chromosomal replication initiator protein DnaA [Verrucomicrobiota bacterium] diamond 450 102 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
28768490 28768490 PRJNA854078_P_NODE_8967_length_314_cov_1.473029_g8755_i0 PRJNA854078 8967 314 1.473029 4.62531106 Bacteria 2 Bacteria Bacteria 50.1 1.56e-4   NR HXG63010.1 2026780 g8755 i0 39.8 1.68152866242038 93 49 88.9 3 283 5 90 175 HXG63010.1 thermonuclease family protein [Planctomycetota bacterium] diamond 528 50.1 1 Bacteria PVC group Pseudomonadati Planctomycetota         Planctomycetota bacterium
29202560 29202560 PRJNA854078_P_NODE_7289_length_349_cov_1.420290_g7077_i0 PRJNA854078 7289 349 1.42029 4.9568121 Candidatus Omnitrophota bacterium 2035772 Bacteria Bacteria 43.9 0.048   NR MBI3601587.1 2035772 g7077 i0 34.4 0.799426934097421 93 54 79.1 2 289 14 52 138 MBI3601587.1 type I DNA topoisomerase [Candidatus Omnitrophota bacterium] diamond 279 43.9 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Candidatus Omnitrophota bacterium
29865475 29865475 PRJNA854078_P_NODE_10871_length_286_cov_1.084507_g10659_i0 PRJNA854078 10871 286 1.084507 3.10169002 Candidatus Brocadiaceae bacterium 2094028 Bacteria Bacteria 61.6 1.4e-8   NR MCP4268390.1 2094028 g10659 i0 34.4 0.944055944055944 90 58 94.4 1 9 278 56 144 MCP4268390.1 hypothetical protein [Candidatus Brocadiaceae bacterium] diamond 270 61.6 1 Bacteria PVC group Pseudomonadati Planctomycetota Candidatus Brocadiia Candidatus Brocadiales Candidatus Brocadiaceae   Candidatus Brocadiaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;