RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA853203" and tax_phylum = "Armatimonadota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Armatimonadota · 6 ✖

tax_kingdom 1

bioproject 1

  • PRJNA853203 · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2116873 2116873 PRJNA853203_P_NODE_39462_length_246_cov_0.901734_g39313_i0 PRJNA853203 39462 246 0.901734 2.21826564 uncultured Armatimonadetes bacterium 157466 Bacteria Bacteria 281 2.6000000000000007e-71   NTclustered gi|2874254000|emb|OY970325.1| 157466 g39313 i0 88.017 132.154471544715 242 23 97 6 3 241 1305011 1305249 MAG: uncultured Armatimonadetes bacterium isolate MFD05942.bin.1.84 genome assembly, chromosome: 1 blastn 32510 281 1 Bacteria   Bacillati Armatimonadota         uncultured Armatimonadetes bacterium
17419788 17419788 PRJNA853203_P_NODE_49574_length_230_cov_2.592357_g49425_i0 PRJNA853203 49574 230 2.592357 5.9624211 Fimbriimonadaceae bacterium 2682144 Bacteria Bacteria 220 5.32e-53   NTclustered gi|2076449834|gb|CP075365.1| 2682144 g49425 i0 84.615 3.53913043478261 221 34 96 0 1 221 2261274 2261054 MAG: Fimbriimonadaceae bacterium isolate ACE_ARM2 chromosome blastn 814 220 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales Fimbriimonadaceae   Fimbriimonadaceae bacterium
24186151 24186151 PRJNA853203_P_NODE_15119_length_277_cov_1.220588_g14970_i0 PRJNA853203 15119 277 1.220588 3.38102876 Armatimonadota bacterium 2033014 Bacteria Bacteria 182 3.43e-54   NR MCL6533319.1 2033014 g14970 i0 100 0.985559566787004 91 0 98.6 0 3 275 219 309 MCL6533319.1 sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC [Armatimonadota bacterium] diamond 273 182 1 Bacteria   Bacillati Armatimonadota         Armatimonadota bacterium
27094832 27094832 PRJNA853203_P_NODE_16362_length_274_cov_1.472637_g16213_i0 PRJNA853203 16362 274 1.472637 4.03502538 PVC group 1783257 Bacteria Bacteria 92 2.53e-20   NR MDQ2800601.1 2033014 g16213 i0 53.8 14.6386861313869 80 37 87.6 0 256 17 163 242 MDQ2800601.1 DUF2071 domain-containing protein [Armatimonadota bacterium] diamond 4011 92 1 Bacteria   Bacillati Armatimonadota         Armatimonadota bacterium
28444784 28444784 PRJNA853203_P_NODE_40886_length_245_cov_1.569767_g40737_i0 PRJNA853203 40886 245 1.569767 3.84592915 Armatimonadota bacterium 2033014 Bacteria Bacteria 71.6 2.52e-12   NR MBW3637775.1 2033014 g40737 i0 52.6 0.930612244897959 76 36 93.1 0 16 243 90 165 MBW3637775.1 hypothetical protein [Armatimonadota bacterium] diamond 228 71.6 1 Bacteria   Bacillati Armatimonadota         Armatimonadota bacterium
29612524 29612524 PRJNA853203_P_NODE_32830_length_250_cov_0.881356_g32681_i0 PRJNA853203 32830 250 0.881356 2.20339 Fimbriimonadaceae bacterium 2682144 Bacteria Bacteria 97.8 4.91e-23   NR MCE2767070.1 2682144 g32681 i0 69.2 0.78 65 20 78 0 199 5 1 65 MCE2767070.1 hypothetical protein [Fimbriimonadaceae bacterium] diamond 195 97.8 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales Fimbriimonadaceae   Fimbriimonadaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;