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contig_metadata

24 rows where bioproject = "PRJNA853203", tax_kingdom = "Pseudomonadati" and tax_phylum = "Bdellovibrionota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 24 ✖

tax_kingdom 1

  • Pseudomonadati · 24 ✖

bioproject 1

  • PRJNA853203 · 24 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
841435 841435 PRJNA853203_P_NODE_30581_length_251_cov_0.876404_g30432_i0 PRJNA853203 30581 251 0.876404 2.19977404 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 91.7 1.5700000000000001e-19   NR MCC7405359.1 2053517 g30432 i0 50.6 1.67330677290837 83 41 99.2 0 3 251 81 163 MCC7405359.1 S8 family serine peptidase [Bdellovibrionales bacterium] diamond 420 91.7 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
2116967 2116967 PRJNA853203_P_NODE_5142_length_333_cov_0.900000_g4993_i0 PRJNA853203 5142 333 0.9 2.997 Pseudobdellovibrionaceae bacterium 2026715 Bacteria Bacteria 333 1e-86   NTclustered gi|2258818259|gb|CP060220.1| 2026715 g4993 i0 85.849 4.94294294294294 318 40 95 3 1 317 3251283 3251596 MAG: Pseudobdellovibrionaceae bacterium isolate HK-STAS-BDEL-7 chromosome blastn 1646 333 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae   Pseudobdellovibrionaceae bacterium
10163238 10163238 PRJNA853203_P_NODE_50368_length_203_cov_4.230769_g50219_i0 PRJNA853203 50368 203 4.230769 8.58846107 Bacteriovoracaceae bacterium 2081706 Bacteria Bacteria 130 6.62e-34   NR MBY0517277.1 2081706 g50219 i0 92.5 0.990147783251232 67 5 99 0 3 203 63 129 MBY0517277.1 sodium:alanine symporter family protein [Bacteriovoracaceae bacterium] diamond 201 130 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae   Bacteriovoracaceae bacterium
17419786 17419786 PRJNA853203_P_NODE_49094_length_234_cov_2.881988_g48945_i0 PRJNA853203 49094 234 2.881988 6.74385192 Bacteriovoracaceae bacterium 2081706 Bacteria Bacteria 74.3 9.06e-14   NR MFL5785836.1 2081706 g48945 i0 63.5 0.666666666666667 52 19 66.7 0 5 160 193 244 MFL5785836.1 DNA-formamidopyrimidine glycosylase family protein [Bacteriovoracaceae bacterium] diamond 156 74.3 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae   Bacteriovoracaceae bacterium
21636764 21636764 PRJNA853203_P_NODE_32157_length_250_cov_0.881356_g32008_i0 PRJNA853203 32157 250 0.881356 2.20339 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 126 6.25e-33   NR MCC7403422.1 2053517 g32008 i0 71.6 1.908 81 23 97.2 0 248 6 252 332 MCC7403422.1 D-glycero-beta-D-manno-heptose-7-phosphate kinase [Bdellovibrionales bacterium] diamond 477 126 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
27149413 27149413 PRJNA853203_P_NODE_41262_length_245_cov_0.906977_g41113_i0 PRJNA853203 41262 245 0.906977 2.22209365 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 86.3 2.54e-19   NR MBY0415735.1 2053517 g41113 i0 50.6 0.991836734693878 81 40 99.2 0 243 1 21 101 MBY0415735.1 universal stress protein [Bdellovibrionales bacterium] diamond 243 86.3 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
27347898 27347898 PRJNA853203_P_NODE_43023_length_244_cov_1.257310_g42874_i0 PRJNA853203 43023 244 1.25731 3.0678364 Bdellovibrio 958 Bacteria Bacteria 119 1.05e-31   NR WP_284605181.1 958 g42874 i0 65.4 9.95901639344262 81 28 99.6 0 2 244 74 154 WP_284605181.1 MULTISPECIES: HIT family protein [Bdellovibrio] diamond 2430 119 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio  
27844536 27844536 PRJNA853203_P_NODE_17724_length_271_cov_1.424242_g17575_i0 PRJNA853203 17724 271 1.424242 3.8596958200000002 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 65.5 5.03e-10   NR MBX3021255.1 2053517 g17575 i0 50.8 0.675276752767528 61 30 67.5 0 184 2 17 77 MBX3021255.1 oligosaccharide flippase family protein [Bdellovibrionales bacterium] diamond 183 65.5 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
28286536 28286536 PRJNA853203_P_NODE_21146_length_264_cov_1.062827_g20997_i0 PRJNA853203 21146 264 1.062827 2.80586328 Halobacteriovorax sp. HLS 2234000 Bacteria Bacteria 90.5 7.99e-20   NR WP_127716242.1 2234000 g20997 i0 58.1 0.840909090909091 74 27 84.1 1 250 29 26 95 WP_127716242.1 substrate-binding periplasmic protein [Halobacteriovorax sp. HLS] diamond 222 90.5 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Halobacteriovoraceae Halobacteriovorax Halobacteriovorax sp. HLS
28349880 28349880 PRJNA853203_P_NODE_46386_length_243_cov_0.858824_g46237_i0 PRJNA853203 46386 243 0.858824 2.08694232 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 55.8 4.71e-7   NR MBX3021024.1 2053517 g46237 i0 71.4 0.432098765432099 35 10 43.2 0 106 2 1 35 MBX3021024.1 endonuclease III [Bdellovibrionales bacterium] diamond 105 55.8 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
28484448 28484448 PRJNA853203_P_NODE_26766_length_253_cov_0.866667_g26617_i0 PRJNA853203 26766 253 0.866667 2.19266751 Bdellovibrio 958 Bacteria Bacteria 80.9 4.48e-16   NR WP_374074901.1 958 g26617 i0 51.2 2.05138339920949 86 40 99.6 2 2 253 59 144 WP_374074901.1 MULTISPECIES: cysteine hydrolase family protein [Bdellovibrio] diamond 519 81.3 0.995079950799508 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio  
29013259 29013259 PRJNA853203_P_NODE_10068_length_289_cov_1.199074_g9919_i0 PRJNA853203 10068 289 1.199074 3.46532386 Pseudobdellovibrionaceae bacterium 2026715 Bacteria Bacteria 137 5.87e-40   NR MBX3040068.1 2026715 g9919 i0 72.8 0.84083044982699 81 22 84.1 0 253 11 4 84 MBX3040068.1 hypothetical protein [Pseudobdellovibrionaceae bacterium] diamond 243 137 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae   Pseudobdellovibrionaceae bacterium
29139555 29139555 PRJNA853203_P_NODE_40589_length_245_cov_2.250000_g40440_i0 PRJNA853203 40589 245 2.25 5.5125 Peredibacter sp. HCB2-198 3383025 Bacteria Bacteria 174 1.77e-50   NR WP_408098179.1 3383025 g40440 i0 96.3 0.991836734693878 81 3 99.2 0 245 3 28 108 WP_408098179.1 acetyl-CoA carboxylase biotin carboxylase subunit [Peredibacter sp. HCB2-198] diamond 243 174 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Peredibacter Peredibacter sp. HCB2-198
29833887 29833887 PRJNA853203_P_NODE_45391_length_243_cov_0.917647_g45242_i0 PRJNA853203 45391 243 0.917647 2.22988221 Pseudobdellovibrio exovorus 453816 Bacteria Bacteria 68.2 2.59e-11   NR WP_015470256.1 453816 g45242 i0 60 1.45679012345679 60 17 71.6 2 1 174 239 293 WP_015470256.1 tRNA pseudouridine(55) synthase TruB [Pseudobdellovibrio exovorus] diamond 354 68.2 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Pseudobdellovibrio Pseudobdellovibrio exovorus
29991896 29991896 PRJNA853203_P_NODE_35111_length_248_cov_1.782857_g34962_i0 PRJNA853203 35111 248 1.782857 4.42148536 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 102 4.06e-25   NR MBX3022022.1 2053517 g34962 i0 64.1 0.943548387096774 78 28 94.4 0 247 14 28 105 MBX3022022.1 prepilin-type N-terminal cleavage/methylation domain-containing protein [Bdellovibrionales bacterium] diamond 234 102 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
30371420 30371420 PRJNA853203_P_NODE_20852_length_264_cov_1.633508_g20703_i0 PRJNA853203 20852 264 1.633508 4.31246112 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 87.8 6.76e-18   NR HVK62061.1 2053517 g20703 i0 55.3 0.965909090909091 85 36 96.6 1 259 5 889 971 HVK62061.1 Ig-like domain-containing protein [Bdellovibrionales bacterium] diamond 255 87.8 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
30600231 30600231 PRJNA853203_P_NODE_18473_length_269_cov_1.897959_g18324_i0 PRJNA853203 18473 269 1.897959 5.10550971 Bdellovibrio 958 Bacteria Bacteria 164 3.12e-50   NR MBC7466343.1 28201 g18324 i0 84.3 1.98513011152416 89 14 99.3 0 267 1 34 122 MBC7466343.1 Co2+/Mg2+ efflux protein ApaG [Bdellovibrio sp.] diamond 534 165 0.993939393939394 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp.
30750174 30750174 PRJNA853203_P_NODE_15334_length_276_cov_1.605911_g15185_i0 PRJNA853203 15334 276 1.605911 4.43231436 Bdellovibrionota bacterium 3034175 Bacteria Bacteria 125 1.1699999999999998e-31   NR MEK6773043.1 3034175 g15185 i0 63.7 0.989130434782609 91 33 98.9 0 4 276 105 195 MEK6773043.1 metallophosphoesterase [Bdellovibrionota bacterium] diamond 273 125 1 Bacteria   Pseudomonadati Bdellovibrionota         Bdellovibrionota bacterium
30758375 30758375 PRJNA853203_P_NODE_20254_length_266_cov_1.025907_g20105_i0 PRJNA853203 20254 266 1.025907 2.72891262 Pseudomonadati 3379134 Bacteria Bacteria 114 4.44e-27   NR MBC7692375.1 2599941 g20105 i0 81.2 2.33458646616541 69 13 77.8 0 59 265 327 395 MBC7692375.1 fatty acid oxidation complex subunit alpha FadB [Oligoflexia bacterium] diamond 621 115 0.991304347826087 Bacteria   Pseudomonadati Bdellovibrionota Oligoflexia       Oligoflexia bacterium
30844997 30844997 PRJNA853203_P_NODE_45714_length_243_cov_0.917647_g45565_i0 PRJNA853203 45714 243 0.917647 2.22988221 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 137 4.5299999999999997e-38   NR HMN69334.1 2053517 g45565 i0 78.8 2.93827160493827 80 17 98.8 0 2 241 81 160 HMN69334.1 type I methionyl aminopeptidase [Bdellovibrionales bacterium] diamond 714 137 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
31002971 31002971 PRJNA853203_P_NODE_30114_length_251_cov_0.915730_g29965_i0 PRJNA853203 30114 251 0.91573 2.2984823 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 108 1.6700000000000002e-26   NR MBX3021415.1 2053517 g29965 i0 65 0.956175298804781 80 27 95.6 1 3 242 113 191 MBX3021415.1 hypothetical protein [Bdellovibrionales bacterium] diamond 240 108 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
31382353 31382353 PRJNA853203_P_NODE_46956_length_242_cov_1.325444_g46807_i0 PRJNA853203 46956 242 1.325444 3.20757448 Pseudobdellovibrionaceae bacterium 2026715 Bacteria Bacteria 122 1.16e-30   NR MDQ3235709.1 2026715 g46807 i0 72.8 1.00413223140496 81 21 99.2 1 241 2 338 418 MDQ3235709.1 O-antigen ligase family protein [Pseudobdellovibrionaceae bacterium] diamond 243 122 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae   Pseudobdellovibrionaceae bacterium
32394646 32394646 PRJNA853203_P_NODE_32419_length_250_cov_0.881356_g32270_i0 PRJNA853203 32419 250 0.881356 2.20339 Pseudobdellovibrionaceae bacterium 2026715 Bacteria Bacteria 45.4 0.00447   NR MBX2988663.1 2026715 g32270 i0 35.9 0.936 78 46 92.4 3 19 249 6 80 MBX2988663.1 hypothetical protein [Pseudobdellovibrionaceae bacterium] diamond 234 45.4 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae   Pseudobdellovibrionaceae bacterium
32646922 32646922 PRJNA853203_P_NODE_30960_length_251_cov_0.876404_g30811_i0 PRJNA853203 30960 251 0.876404 2.19977404 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 84 1.27e-16   NR MBA2404122.1 2053517 g30811 i0 86.5 0.621513944223108 52 7 62.2 0 250 95 128 179 MBA2404122.1 hypothetical protein [Bdellovibrionales bacterium] diamond 156 84 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;