RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA853203", tax_clade = "delta/epsilon subdivisions" and tax_superkingdom = "Bacteria"

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analysis 2

tax_superkingdom 1

  • Bacteria · 3 ✖

tax_clade 1

  • delta/epsilon subdivisions · 3 ✖

bioproject 1

  • PRJNA853203 · 3 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3786615 3786615 PRJNA853203_P_NODE_36503_length_248_cov_0.891429_g36354_i0 PRJNA853203 36503 248 0.891429 2.21074392 Bacteria 2 Bacteria Bacteria 311 3.35e-80   NTclustered gi|374854163|dbj|AP011765.1| 34034 g36354 i0 91.228 161.431451612903 228 20 92 0 21 248 13588 13361 Uncultured delta proteobacterium DNA, fosmid clone: JFF046_H12 blastn 40035 311 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
28728839 28728839 PRJNA853203_P_NODE_24307_length_257_cov_1.505435_g24158_i0 PRJNA853203 24307 257 1.505435 3.86896795 Lujinxingia vulgaris 2600176 Bacteria Bacteria 43.5 0.024   NR WP_146974129.1 2600176 g24158 i0 36.4 1.0272373540856 88 29 92.2 4 241 5 27 96 WP_146974129.1 DUF4397 domain-containing protein [Lujinxingia vulgaris] diamond 264 43.5 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria Bradymonadales Lujinxingiaceae Lujinxingia Lujinxingia vulgaris
31991339 31991339 PRJNA853203_P_NODE_34978_length_248_cov_2.114286_g34829_i0 PRJNA853203 34978 248 2.114286 5.24342928 Bacteria 2 Bacteria Bacteria 122 2.43e-31   NR PJB32980.1 1973968 g34829 i0 77.8 2.95161290322581 81 18 98 0 5 247 11 91 PJB32980.1 MAG: hypothetical protein CO109_01715, partial [Deltaproteobacteria bacterium CG_4_9_14_3_um_filter_65_9] diamond 732 123 0.991869918699187 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium CG_4_9_14_3_um_filter_65_9

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;