RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA853203", tax_clade = "Amoebozoa" and tax_phylum = "Discosea"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Discosea · 3 ✖

tax_clade 1

  • Amoebozoa · 3 ✖

bioproject 1

  • PRJNA853203 · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3392108 3392108 PRJNA853203_P_NODE_2923_length_386_cov_0.980831_g2776_i0 PRJNA853203 2923 386 0.980831 3.78600766 Vannella simplex 197532 Discosea other_Eukaryota 702 0   NTclustered gi|284192609|gb|GQ265407.1| 197532 g2776 i0 99.482 99.3341968911917 386 2 100 0 1 386 318 703 Vannella simplex strain L4A Cl 4/1/2 clone A147.4 18S ribosomal RNA gene, partial sequence blastn 38343 702 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella simplex
11045035 11045035 PRJNA853203_P_NODE_22109_length_262_cov_0.925926_g21960_i0 PRJNA853203 22109 262 0.925926 2.42592612 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 132 1.57e-34   NR XP_004337429.1 1257118 g21960 i0 75.9 1.99236641221374 87 21 99.6 0 261 1 273 359 XP_004337429.1 mitochondrial aspartate aminotransferase [Acanthamoeba castellanii str. Neff] diamond 522 132 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
32867650 32867650 PRJNA853203_P_NODE_40220_length_246_cov_0.901734_g40071_i0 PRJNA853203 40220 246 0.901734 2.21826564 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 100 2.6e-22   NR XP_004339809.1 1257118 g40071 i0 62.2 1 82 31 100 0 246 1 138 219 XP_004339809.1 communication mutant protein f, putative [Acanthamoeba castellanii str. Neff] diamond 246 100 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;