RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA853194" and tax_kingdom = "Thermotogati"

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analysis 2

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Thermotogati · 3 ✖

bioproject 1

  • PRJNA853194 · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2116644 2116644 PRJNA853194_S_NODE_8882_length_627_cov_8.675090_g7865_i0 PRJNA853194 8882 627 8.67509 54.3928143 Petrotoga mobilis 69499 Bacteria Bacteria 54.7 0.017   NTclustered gi|160359135|gb|CP000879.1| 403833 g7865 i0 100 0.0462519936204147 29 0 5 0 445 473 700334 700306 Petrotoga mobilis SJ95, complete genome blastn 29 54.7 1 Bacteria   Thermotogati Thermotogota Thermotogae Petrotogales Petrotogaceae Petrotoga Petrotoga mobilis
29928829 29928829 PRJNA853194_S_NODE_9811_length_600_cov_8.406072_g8776_i0 PRJNA853194 9811 600 8.406072 50.436432 Marinitoga hydrogenitolerans 287990 Bacteria Bacteria 47.4 0.0232   NR WP_072862389.1 287990 g8776 i0 25.5 0.785 157 103 78.5 3 492 22 738 880 WP_072862389.1 chromosome segregation protein SMC [Marinitoga hydrogenitolerans] diamond 471 47.4 1 Bacteria   Thermotogati Thermotogota Thermotogae Petrotogales Petrotogaceae Marinitoga Marinitoga hydrogenitolerans
30276511 30276511 PRJNA853194_S_NODE_8692_length_633_cov_7.410714_g7681_i0 PRJNA853194 8692 633 7.410714 46.90981962 Marinitoga hydrogenitolerans 287990 Bacteria Bacteria 49.7 0.0047   NR WP_072862389.1 287990 g7681 i0 25 0.796208530805687 168 101 79.6 3 525 22 738 880 WP_072862389.1 chromosome segregation protein SMC [Marinitoga hydrogenitolerans] diamond 504 49.7 1 Bacteria   Thermotogati Thermotogota Thermotogae Petrotogales Petrotogaceae Marinitoga Marinitoga hydrogenitolerans

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;