RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA853194", tax_kingdom = "Pseudomonadati" and tax_phylum = "Myxococcota"

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tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 2 ✖

tax_kingdom 1

  • Pseudomonadati · 2 ✖

bioproject 1

  • PRJNA853194 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7219084 7219084 PRJNA853194_S_NODE_6986_length_697_cov_36.652244_g6041_i0 PRJNA853194 6986 697 36.652244 255.46614068 Cyanobacteriota/Melainabacteria group 1798711 Bacteria Bacteria 263 3.07e-78   NR MCB9640303.1 2026763 g6041 i0 58.8 18.5078909612626 204 84 87.8 0 688 77 750 953 MCB9640303.1 aminomethyl-transferring glycine dehydrogenase [Myxococcales bacterium] diamond 12900 263 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
28791740 28791740 PRJNA853194_S_NODE_40387_length_337_cov_2.359848_g39296_i0 PRJNA853194 40387 337 2.359848 7.95268776 Sandaracinaceae bacterium 2510337 Bacteria Bacteria 97.4 6.95e-21   NR MCS6856338.1 2510337 g39296 i0 41.4 1.98516320474777 111 65 98.8 0 5 337 341 451 MCS6856338.1 thiamine pyrophosphate-binding protein [Sandaracinaceae bacterium] diamond 669 97.4 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Sandaracinaceae   Sandaracinaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;