RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

17 rows where bioproject = "PRJNA853194", tax_clade = "Sar" and tax_phylum = "Apicomplexa"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 17 ✖

tax_clade 1

  • Sar · 17 ✖

bioproject 1

  • PRJNA853194 · 17 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8494067 8494067 PRJNA853194_S_NODE_81507_length_245_cov_1.924419_g80416_i0 PRJNA853194 81507 245 1.924419 4.71482655 Babesia ovata 189622 SAR_Eukaryotes SAR_Eukaryotes 436 5.229999999999999e-118   NTclustered gi|1624698158|ref|XM_029013947.1| 189622 g80416 i0 98.776 1517.41632653061 245 3 100 0 1 245 1653 1897 Babesia ovata endonuclease-reverse transcriptase (BOVATA_050300), partial mRNA blastn 371767 436 1 Eukaryota Sar   Apicomplexa Aconoidasida Piroplasmida Babesiidae Babesia Babesia ovata
10162980 10162980 PRJNA853194_S_NODE_24988_length_410_cov_3.074184_g23897_i0 PRJNA853194 24988 410 3.074184 12.6041544 Apicomplexa 5794 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.039   NTclustered gi|1620132018|ref|XM_028674360.1| 5849 g23897 i0 96.774 0.14390243902439 31 1 8 0 50 80 1061 1031 Plasmodium gallinaceum aspartate--tRNA ligase, putative (PGAL8A_00035800), partial mRNA blastn 59 52.8 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium gallinaceum
11438307 11438307 PRJNA853194_S_NODE_59649_length_283_cov_3.404762_g58558_i0 PRJNA853194 59649 283 3.404762 9.63547646 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 252 2.4e-62   NTclustered gi|833494891|ref|XM_012915035.1| 5866 g58558 i0 96.129 182.540636042403 155 5 54 1 1 154 869 715 Babesia bigemina hypothetical protein, conserved partial mRNA blastn 51659 252 1 Eukaryota Sar   Apicomplexa Aconoidasida Piroplasmida Babesiidae Babesia Babesia bigemina
14868351 14868351 PRJNA853194_S_NODE_41672_length_333_cov_1.600000_g40581_i0 PRJNA853194 41672 333 1.6 5.328 Theileria orientalis 68886 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.031   NTclustered gi|2287638987|gb|CP102586.1| 68886 g40581 i0 96.774 0.0930930930930931 31 1 9 0 200 230 22403 22373 Theileria orientalis strain Fish Creek apicoplast, complete genome blastn 31 52.8 1 Eukaryota Sar   Apicomplexa Aconoidasida Piroplasmida Theileriidae Theileria Theileria orientalis
16143809 16143809 PRJNA853194_S_NODE_74393_length_254_cov_3.657459_g73302_i0 PRJNA853194 74393 254 3.657459 9.28994586 Plasmodium berghei 5821 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.023   NTclustered gi|1843423010|dbj|LC541821.1| 5823 g73302 i0 100 0.110236220472441 28 0 11 0 86 113 23963 23936 Plasmodium berghei ANKA chromosome 1 telomere region, partial sequence blastn 28 52.8 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium berghei
18691445 18691445 PRJNA853194_S_NODE_29795_length_382_cov_3.472492_g28704_i0 PRJNA853194 29795 382 3.472492 13.26491944 Plasmodium chabaudi 5825 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.036   NTclustered gi|1027953362|ref|XM_735395.2| 31271 g28704 i0 100 0.0732984293193717 28 0 7 0 304 331 2342 2369 Plasmodium chabaudi chabaudi conserved Plasmodium protein, unknown function (PCHAS_0624300), partial mRNA blastn 28 52.8 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium chabaudi
18691768 18691768 PRJNA853194_S_NODE_45135_length_322_cov_0.891566_g44044_i0 PRJNA853194 45135 322 0.891566 2.87084252 Plasmodium vinckei 5860 SAR_Eukaryotes SAR_Eukaryotes 56.5 0.002   NTclustered gi|669201108|ref|XM_008627331.1| 54757 g44044 i0 96.97 0.102484472049689 33 1 10 0 72 104 1549 1581 Plasmodium vinckei vinckei ATP-dependent RNA helicase DBP7, putative (PVVCY_0601910), partial mRNA blastn 33 56.5 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium vinckei
19967296 19967296 PRJNA853194_S_NODE_61816_length_279_cov_1.053398_g60725_i0 PRJNA853194 61816 279 1.053398 2.93898042 Plasmodium sp. gorilla clade G2 880535 SAR_Eukaryotes SAR_Eukaryotes 56.5 0.002   NTclustered gi|1620184436|ref|XM_028680379.1| 880535 g60725 i0 92.5 0.14336917562724 40 1 14 2 57 94 348 387 Plasmodium sp. gorilla clade G2 Plasmodium exported protein (PHISTa), unknown function (PADL01_0013800), partial mRNA blastn 40 56.5 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium sp. gorilla clade G2
23792099 23792099 PRJNA853194_S_NODE_16359_length_486_cov_1.002421_g15270_i0 PRJNA853194 16359 486 1.002421 4.87176606 Plasmodium reichenowi 5854 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.047   NTclustered gi|1145257067|ref|XM_012906141.2| 5854 g15270 i0 100 0.0576131687242798 28 0 6 0 431 458 1655 1628 Plasmodium reichenowi hypothetical protein partial mRNA blastn 28 52.8 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium reichenowi
27379535 27379535 PRJNA853194_S_NODE_343_length_1966_cov_12.753830_g225_i0 PRJNA853194 343 1966 12.75383 250.7402978 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 57 3.77e-4   NR ETW55751.1 57270 g225 i0 23.3 8.35757884028484 580 337 79.3 28 1822 263 1347 1878 ETW55751.1 hypothetical protein PFUGPA_02256, partial [Plasmodium falciparum Palo Alto/Uganda] diamond 16431 57 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium falciparum
27907563 27907563 PRJNA853194_S_NODE_13105_length_531_cov_54.844978_g12030_i0 PRJNA853194 13105 531 54.844978 291.22683318 Plasmodium relictum 85471 SAR_Eukaryotes SAR_Eukaryotes 160 4.38e-44   NR XP_028536015.1 85471 g12030 i0 47.4 1.74011299435028 154 81 87 0 530 69 260 413 XP_028536015.1 glycylpeptide N-tetradecanoyltransferase, putative [Plasmodium relictum] diamond 924 160 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium relictum
28191772 28191772 PRJNA853194_S_NODE_76426_length_251_cov_1.337079_g75335_i0 PRJNA853194 76426 251 1.337079 3.35606829 Cyclospora cayetanensis 88456 SAR_Eukaryotes SAR_Eukaryotes 43.5 0.0225   NR XP_026193722.1 88456 g75335 i0 39.3 0.669322709163347 56 33 65.7 1 199 35 884 939 XP_026193722.1 uncharacterized protein LOC34623461 [Cyclospora cayetanensis] diamond 168 43.5 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Eimeriidae Cyclospora Cyclospora cayetanensis
29044684 29044684 PRJNA853194_S_NODE_25088_length_409_cov_6.181548_g23997_i0 PRJNA853194 25088 409 6.181548 25.28253132 Cryptosporidium muris RN66 441375 SAR_Eukaryotes SAR_Eukaryotes 64.7 4.35e-9   NR XP_002140823.1 441375 g23997 i0 36.1 2.30317848410758 108 53 69.7 5 5 289 284 388 XP_002140823.1 uncharacterized protein CMU_009660 [Cryptosporidium muris RN66] diamond 942 64.7 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Cryptosporidiidae Cryptosporidium Cryptosporidium muris
29139534 29139534 PRJNA853194_S_NODE_4569_length_833_cov_45.030263_g3769_i0 PRJNA853194 4569 833 45.030263 375.10209079 Toxoplasma gondii GT1 507601 SAR_Eukaryotes SAR_Eukaryotes 111 1.7599999999999998e-24   NR EPR61646.1 507601 g3769 i0 30.3 1.57022809123649 218 150 77.8 1 62 709 125 342 EPR61646.1 N-methyl-D-aspartate receptor-associated protein [Toxoplasma gondii GT1] diamond 1308 111 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Toxoplasma Toxoplasma gondii
30979658 30979658 PRJNA853194_S_NODE_12454_length_543_cov_6.980851_g11384_i0 PRJNA853194 12454 543 6.980851 37.90602093 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 134 1.0799999999999999e-32   NR SCP05393.1 36330 g11384 i0 53 13.2099447513812 134 60 74 3 3 404 560 690 SCP05393.1 exoribonuclease, putative [Plasmodium ovale] diamond 7173 135 0.992592592592593 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium ovale
31011021 31011021 PRJNA853194_S_NODE_3574_length_921_cov_20.770047_g2866_i0 PRJNA853194 3574 921 20.770047 191.29213287 Apicomplexa 5794 SAR_Eukaryotes SAR_Eukaryotes 172 2.4799999999999994e-48   NR ETW54969.1 57270 g2866 i0 54.3 2.15960912052117 164 75 53.4 0 811 320 26 189 ETW54969.1 hypothetical protein PFUGPA_02792 [Plasmodium falciparum Palo Alto/Uganda] diamond 1989 172 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium falciparum
32141473 32141473 PRJNA853194_S_NODE_36098_length_353_cov_3.292857_g35007_i0 PRJNA853194 36098 353 3.292857 11.62378521 Plasmodium malariae 5858 SAR_Eukaryotes SAR_Eukaryotes 47.8 0.00212   NR XP_028860370.1 5858 g35007 i0 39.7 1.24079320113314 73 42 60.3 2 18 230 244 316 XP_028860370.1 lipoate-protein ligase B, putative [Plasmodium malariae] diamond 438 47.8 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium malariae

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;