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contig_metadata

6 rows where bioproject = "PRJNA851399" and tax_superkingdom = "Archaea"

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tax_kingdom 2

analysis 2

tax_superkingdom 1

  • Archaea · 6 ✖

tax_clade 1

bioproject 1

  • PRJNA851399 · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2114578 2114578 PRJNA851399_P_NODE_14702_length_196_cov_1.639456_g14249_i0 PRJNA851399 14702 196 1.639456 3.21333376 uncultured crenarchaeote 29281 Archaea Archaea 291 3.3e-74   NTclustered gi|22797874|emb|AJ496176.1| 29281 g14249 i0 93.401 33.3673469387755 197 12 100 1 1 196 7798 7602 Uncultured crenarchaeote 34 kb genomic fragment blastn 6540 291 1 Archaea   Thermoproteati Thermoproteota         uncultured crenarchaeote
7217238 7217238 PRJNA851399_P_NODE_10066_length_249_cov_1.500000_g9613_i0 PRJNA851399 10066 249 1.5 3.735 Candidatus Nitrosocosmicus franklandianus 1798806 Archaea Archaea 339 1.5399999999999998e-88   NTclustered gi|1599533355|emb|LR216287.1| 1798806 g9613 i0 91.498 62.7269076305221 247 19 99 2 3 249 1683 1439 Candidatus Nitrosocosmicus franklandus isolate NFRAN1 genome assembly, chromosome: NFRAN blastn 15619 339 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrososphaerales Nitrososphaeraceae Candidatus Nitrosocosmicus Candidatus Nitrosocosmicus franklandianus
11437802 11437802 PRJNA851399_P_NODE_5769_length_405_cov_1.002809_g5317_i0 PRJNA851399 5769 405 1.002809 4.06137645 root 1 Root_unresolved Root_unresolved 743 0   NTclustered gi|955471768|gb|FJ968093.2| 29281 g5317 i0 99.753 100 405 1 100 0 1 405 548 144 Uncultured crenarchaeote clone Arch_AE_D06 16S ribosomal RNA (rrnA) gene, partial sequence blastn 40500 743 1 Archaea   Thermoproteati Thermoproteota         uncultured crenarchaeote
26770161 26770161 PRJNA851399_P_NODE_39001_length_162_cov_0.893805_g38548_i0 PRJNA851399 39001 162 0.893805 1.4479641 Methanofastidiosum sp. 2666341 Archaea Archaea 89.4 4.56e-19   NR HNU62018.1 2666341 g38548 i0 80.8 0.962962962962963 52 8 96.3 1 158 3 176 225 HNU62018.1 DnaB-like helicase C-terminal domain-containing protein [Methanofastidiosum sp.] diamond 156 89.4 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Candidatus Methanofastidiosia Candidatus Methanofastidiosales Candidatus Methanofastidiosaceae Candidatus Methanofastidiosum Methanofastidiosum sp.
30884693 30884693 PRJNA851399_P_NODE_24194_length_168_cov_1.714286_g23741_i0 PRJNA851399 24194 168 1.714286 2.88000048 Thermoproteati 1783275 Archaea Archaea 109 1.16e-26   NR TLX88064.1 2026795 g23741 i0 96.4 4.89285714285714 55 2 98.2 0 2 166 215 269 TLX88064.1 MAG: TIGR00300 family protein [Nitrososphaerota archaeon] diamond 822 110 0.990909090909091 Archaea   Thermoproteati Nitrososphaerota         Nitrososphaerota archaeon
31666761 31666761 PRJNA851399_P_NODE_33137_length_164_cov_0.886957_g32684_i0 PRJNA851399 33137 164 0.886957 1.45460948 Candidatus Bathyarchaeota archaeon 2026714 Archaea Archaea 41.2 0.0455   NR RLI46151.1 2026714 g32684 i0 46.9 0.585365853658537 32 17 58.5 0 30 125 467 498 RLI46151.1 MAG: glycosyl transferase [Candidatus Bathyarchaeota archaeon] diamond 96 41.2 1 Archaea   Thermoproteati Candidatus Bathyarchaeota         Candidatus Bathyarchaeota archaeon

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;