RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA851399" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA851399 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2115040 2115040 PRJNA851399_P_NODE_8422_length_286_cov_6.957806_g7969_i0 PRJNA851399 8422 286 6.957806 19.89932516 Albugo laibachii 653948 SAR_Eukaryotes SAR_Eukaryotes 327 3.919999999999999e-85   NTclustered gi|325195057|emb|FR825852.1| 890382 g7969 i0 88.489 69.1853146853147 278 22 95 8 15 286 108 381 Albugo laibachii Nc14, genomic contig CONTIG_2891_NC14_v4_540_391 blastn 19787 327 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
7217584 7217584 PRJNA851399_P_NODE_33226_length_164_cov_0.886957_g32773_i0 PRJNA851399 33226 164 0.886957 1.45460948 Wilsoniana portulacae 572137 SAR_Eukaryotes SAR_Eukaryotes 303 3.42e-78   NTclustered gi|67090814|gb|DQ007506.1| 572137 g32773 i0 100 102.140243902439 164 0 100 0 1 164 60 223 Albugo portulacae isolate AR374 large subunit ribosomal RNA gene, partial sequence blastn 16751 303 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Wilsoniana Wilsoniana portulacae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;