RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA851399" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA851399 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29431385 29431385 PRJNA851399_P_NODE_33469_length_164_cov_0.886957_g33016_i0 PRJNA851399 33469 164 0.886957 1.45460948 Metazoa 33208 Nematoda Nematoda 57.4 1.47e-8   NR XGW30792.1 6289 g33016 i0 53.6 13.0609756097561 56 22 95.1 1 1 156 10 65 XGW30792.1 hypothetical protein V3C99_009621 [Haemonchus contortus] diamond 2142 57.8 0.993079584775087 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Trichostrongylidae Haemonchus Haemonchus contortus
32331628 32331628 PRJNA851399_P_NODE_18979_length_180_cov_1.557252_g18526_i0 PRJNA851399 18979 180 1.557252 2.8030536 Bursaphelenchus xylophilus 6326 Nematoda Nematoda 84.3 3.51e-19   NR CAD5233672.1 6326 g18526 i0 61.7 1 60 23 100 0 1 180 55 114 CAD5233672.1 unnamed protein product [Bursaphelenchus xylophilus] diamond 180 84.3 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Bursaphelenchus Bursaphelenchus xylophilus
32497886 32497886 PRJNA851399_P_NODE_22019_length_173_cov_1.274194_g21566_i0 PRJNA851399 22019 173 1.274194 2.20435562 root 1 Root_unresolved Root_unresolved 82 1.23e-18   NR VDO12637.1 42155 g21566 i0 93.2 2.28901734104046 44 3 76.3 0 40 171 1 44 VDO12637.1 unnamed protein product [Brugia timori] diamond 396 82.8 0.990338164251208 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Brugia Brugia timori

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;