RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA851399" and tax_phylum = "Mollusca"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Mollusca · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA851399 · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4667587 4667587 PRJNA851399_P_NODE_13664_length_204_cov_1.754839_g13211_i0 PRJNA851399 13664 204 1.754839 3.57987156 Physella acuta 109671 Mollusca Mollusca 372 1.2e-98   NTclustered gi|2572452079|ref|XR_009385380.1| 109671 g13211 i0 99.51 2.9656862745098 204 1 100 0 1 204 3749 3546 PREDICTED: Physella acuta large subunit ribosomal RNA (LOC131933988), rRNA blastn 605 372 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda   Physidae Physella Physella acuta
8492273 8492273 PRJNA851399_P_NODE_29687_length_165_cov_1.758621_g29234_i0 PRJNA851399 29687 165 1.758621 2.90172465 Liolophura japonica 13599 Mollusca Mollusca 52.8 0.014   NTclustered gi|2724245538|ref|XM_064748181.1| 13599 g29234 i0 100 1.01818181818182 28 0 17 0 46 73 1643 1670 PREDICTED: Liolophura japonica gelsolin-like protein 2 (LOC135469645), transcript variant X2, mRNA blastn 168 52.8 1 Eukaryota Opisthokonta Metazoa Mollusca Polyplacophora Chitonida Chitonidae Liolophura Liolophura japonica
13593155 13593155 PRJNA851399_P_NODE_31971_length_164_cov_1.773913_g31518_i0 PRJNA851399 31971 164 1.773913 2.90921732 Aplysia californica 6500 Mollusca Mollusca 58.4 2.94e-4   NTclustered gi|1897932199|ref|XM_005103461.3| 6500 g31518 i0 97.143 0.426829268292683 35 0 21 1 54 88 1589 1622 PREDICTED: Aplysia californica casein kinase II subunit alpha (LOC101853332), transcript variant X1, mRNA blastn 70 58.4 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Aplysiida Aplysiidae Aplysia Aplysia californica
30560269 30560269 PRJNA851399_P_NODE_29913_length_165_cov_1.103448_g29460_i0 PRJNA851399 29913 165 1.103448 1.8206892 Mya arenaria 6604 Mollusca Mollusca 41.2 0.0451   NR XP_052793902.1 6604 g29460 i0 33.3 1.52727272727273 42 28 76.4 0 142 17 293 334 XP_052793902.1 mitochondrial import inner membrane translocase subunit TIM44-like isoform X2 [Mya arenaria] diamond 252 41.2 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Myida Myidae Mya Mya arenaria

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;