RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA851399", tax_kingdom = "Pseudomonadati" and tax_phylum = "Thermodesulfobacteriota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 4 ✖

tax_kingdom 1

  • Pseudomonadati · 4 ✖

bioproject 1

  • PRJNA851399 · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3390101 3390101 PRJNA851399_P_NODE_29103_length_166_cov_0.871795_g28650_i0 PRJNA851399 29103 166 0.871795 1.4471797 Geomonas limicola 2740186 Bacteria Bacteria 99.4 1.8399999999999998e-23   NR WP_183361000.1 2740186 g28650 i0 92.6 0.975903614457831 54 4 97.6 0 3 164 90 143 WP_183361000.1 ABC transporter permease [Geomonas limicola] diamond 162 99.4 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Geobacterales Geobacteraceae Geomonas Geomonas limicola
25065549 25065549 PRJNA851399_P_NODE_29820_length_165_cov_1.431034_g29367_i0 PRJNA851399 29820 165 1.431034 2.3612061 Desulfarculia bacterium 3065862 Bacteria Bacteria 54.7 0.004   NTclustered gi|2621702698|emb|OY759590.1| 3065862 g29367 i0 96.97 0.2 33 0 19 1 28 59 1301219 1301251 MAG: Desulfarculia bacterium isolate 49400898-fc5b-42b7-bef8-a303f8702bb8 genome assembly, chromosome: 1 blastn 33 54.7 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfarculia       Desulfarculia bacterium
29076241 29076241 PRJNA851399_P_NODE_36368_length_163_cov_0.894737_g35915_i0 PRJNA851399 36368 163 0.894737 1.45842131 Geobacteraceae bacterium GWC2_58_44 1798318 Bacteria Bacteria 79.3 1.53e-15   NR OGU07332.1 1798318 g35915 i0 81.1 0.975460122699387 53 10 97.5 0 161 3 519 571 OGU07332.1 MAG: hypothetical protein A2075_13775 [Geobacteraceae bacterium GWC2_58_44] diamond 159 79.3 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Geobacterales Geobacteraceae   Geobacteraceae bacterium GWC2_58_44
31540435 31540435 PRJNA851399_P_NODE_36576_length_163_cov_0.824561_g36123_i0 PRJNA851399 36576 163 0.824561 1.34403443 Desulfomicrobium sp. 52017 Bacteria Bacteria 42.7 0.0124   NR MDP3430896.1 52017 g36123 i0 45.2 0.570552147239264 31 17 57.1 0 31 123 171 201 MDP3430896.1 hypothetical protein [Desulfomicrobium sp.] diamond 93 42.7 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfomicrobiaceae Desulfomicrobium Desulfomicrobium sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;