RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA851399", tax_kingdom = "Bacillati" and tax_phylum = "Chloroflexota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Chloroflexota · 4 ✖

tax_kingdom 1

  • Bacillati · 4 ✖

bioproject 1

  • PRJNA851399 · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6337944 6337944 PRJNA851399_P_NODE_24125_length_168_cov_2.571429_g23672_i0 PRJNA851399 24125 168 2.571429 4.32000072 Bacteria 2 Bacteria Bacteria 158 2.91e-34   NTclustered gi|2621704841|emb|OY763089.1| 2026734 g23672 i0 87.97 76.1547619047619 133 16 79 0 1 133 218850 218982 MAG: Dehalococcoidia bacterium isolate e66569de-989e-459c-8942-bbbb2819a0b0 genome assembly, chromosome: 1 blastn 12794 158 1 Bacteria   Bacillati Chloroflexota Dehalococcoidia       Dehalococcoidia bacterium
7217741 7217741 PRJNA851399_P_NODE_7606_length_316_cov_1.048689_g7153_i0 PRJNA851399 7606 316 1.048689 3.31385724 uncultured Chloroflexia bacterium 1672391 Bacteria Bacteria 556 5.14e-154   NTclustered gi|2874254133|emb|OY970218.1| 1672391 g7153 i0 98.418 827.170886075949 316 5 100 0 1 316 18017 18332 MAG: uncultured Chloroflexia bacterium isolate MFD04716.bin.1.117 genome assembly, chromosome: 1 blastn 261386 556 1 Bacteria   Bacillati Chloroflexota Chloroflexia       uncultured Chloroflexia bacterium
27371358 27371358 PRJNA851399_P_NODE_20643_length_176_cov_1.606299_g20190_i0 PRJNA851399 20643 176 1.606299 2.82708624 Candidatus Limnocylindria bacterium 3047546 Bacteria Bacteria 84 2.39e-18   NR HET7685609.1 3047546 g20190 i0 88.5 0.886363636363636 52 6 88.6 0 20 175 1 52 HET7685609.1 hypothetical protein [Candidatus Limnocylindria bacterium] diamond 156 84 1 Bacteria   Bacillati Chloroflexota Candidatus Limnocylindria       Candidatus Limnocylindria bacterium
28507807 28507807 PRJNA851399_P_NODE_34907_length_163_cov_0.894737_g34454_i0 PRJNA851399 34907 163 0.894737 1.45842131 Candidatus Limnocylindria bacterium 3047546 Bacteria Bacteria 55.5 3.92e-7   NR HTJ25737.1 3047546 g34454 i0 81.3 1.76687116564417 32 6 58.9 0 2 97 298 329 HTJ25737.1 aldo/keto reductase [Candidatus Limnocylindria bacterium] diamond 288 55.5 1 Bacteria   Bacillati Chloroflexota Candidatus Limnocylindria       Candidatus Limnocylindria bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;