RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where bioproject = "PRJNA851399", tax_clade = "Amoebozoa" and tax_phylum = "Discosea"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Discosea · 2 ✖

tax_clade 1

  • Amoebozoa · 2 ✖

bioproject 1

  • PRJNA851399 · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10162342 10162342 PRJNA851399_P_NODE_12968_length_211_cov_0.938272_g12515_i0 PRJNA851399 12968 211 0.938272 1.97975392 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 390 3.459999999999999e-104   NTclustered gi|1996291000|gb|MW689486.1| 5756 g12515 i0 100 100 211 0 100 0 1 211 27 237 Acanthamoeba sp. isolate IWS79 small subunit ribosomal RNA gene, partial sequence blastn 21100 390 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba sp.
29139515 29139515 PRJNA851399_P_NODE_37529_length_162_cov_0.902655_g37076_i0 PRJNA851399 37529 162 0.902655 1.4623011 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 47.8 2.1e-4   NR XP_004335984.1 1257118 g37076 i0 53.7 0.759259259259259 41 19 75.9 0 125 3 923 963 XP_004335984.1 ubiquitin domain containing protein [Acanthamoeba castellanii str. Neff] diamond 123 47.8 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;