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contig_metadata

11 rows where bioproject = "PRJNA851399" and tax_clade = "Amoebozoa"

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tax_phylum 2

analysis 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 11 ✖

bioproject 1

  • PRJNA851399 · 11 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
839602 839602 PRJNA851399_P_NODE_9521_length_259_cov_4.257143_g9068_i0 PRJNA851399 9521 259 4.257143 11.02600037 Physarum vernum 742165 Evosea other_Eukaryota 460 3.3099999999999997e-125   NTclustered gi|1864351418|gb|MT704253.1| 742165 g9068 i0 98.837 68.8185328185328 258 3 99 0 2 259 1 258 Physarum vernum voucher sc30823 small subunit ribosomal RNA gene, partial sequence blastn 17824 460 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Physaraceae Physarum Physarum vernum
2114731 2114731 PRJNA851399_P_NODE_24602_length_168_cov_1.277311_g24149_i0 PRJNA851399 24602 168 1.277311 2.14588248 Badhamia macrocarpa 385456 Evosea other_Eukaryota 270 3.5799999999999998e-68   NTclustered gi|2317681365|gb|OP650732.1| 385456 g24149 i0 95.808 68.3630952380952 167 7 99 0 2 168 756 590 Badhamia macrocarpa strain MA-Fungi 90864 small subunit ribosomal RNA gene, partial sequence blastn 11485 270 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Physaraceae Badhamia Badhamia macrocarpa
5942407 5942407 PRJNA851399_P_NODE_17045_length_185_cov_3.191176_g16592_i0 PRJNA851399 17045 185 3.191176 5.9036756 Didymium spongiosum 289992 Evosea other_Eukaryota 207 3.19e-49   NTclustered gi|2161226356|gb|MZ313554.1| 289992 g16592 i0 91.391 61.572972972973 151 11 82 2 35 185 5361 5213 Mucilago crustacea 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 11391 207 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Didymiaceae Didymium Didymium spongiosum
10162342 10162342 PRJNA851399_P_NODE_12968_length_211_cov_0.938272_g12515_i0 PRJNA851399 12968 211 0.938272 1.97975392 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 390 3.459999999999999e-104   NTclustered gi|1996291000|gb|MW689486.1| 5756 g12515 i0 100 100 211 0 100 0 1 211 27 237 Acanthamoeba sp. isolate IWS79 small subunit ribosomal RNA gene, partial sequence blastn 21100 390 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba sp.
16142360 16142360 PRJNA851399_P_NODE_6433_length_370_cov_1.429907_g5981_i0 PRJNA851399 6433 370 1.429907 5.2906559 Physarum rigidum 385469 Evosea other_Eukaryota 348 4.0100000000000003e-91   NTclustered gi|2738858413|gb|PP860885.1| 385469 g5981 i0 84.367 80.5621621621622 371 41 99 14 2 369 84 440 Physarum rigidum strain Ri6 small subunit ribosomal RNA gene, partial sequence; mitochondrial blastn 29808 348 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Physaraceae Physarum Physarum rigidum
19085437 19085437 PRJNA851399_P_NODE_2155_length_791_cov_13.128032_g1830_i0 PRJNA851399 2155 791 13.128032 103.84273312 Physariida 5789 Evosea other_Eukaryota 632 2.229999999999999e-176   NTclustered gi|90968164|emb|AM231296.1| 290853 g1830 i0 90.121 66.9494310998736 496 36 91 11 304 791 1797 1307 Lepidoderma carestianum partial 18S rRNA gene, isolate K18 blastn 52957 632 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Didymiaceae Lepidoderma Lepidoderma carestianum
23791863 23791863 PRJNA851399_P_NODE_79_length_2821_cov_10.611833_g52_i0 PRJNA851399 79 2821 10.611833 299.35980893 Amoebozoa sp. 1892891 Root_unresolved Root_unresolved 1768 0   NTclustered gi|2651357787|gb|PP174302.1| 1892891 g52 i0 85.731 24.6178660049628 1731 181 60 49 1 1705 3217 4907 Amoebozoa sp. isolate 2M small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 69447 1768 1 Eukaryota Amoebozoa             Amoebozoa sp.
23791869 23791869 PRJNA851399_P_NODE_8799_length_276_cov_1.568282_g8346_i0 PRJNA851399 8799 276 1.568282 4.32845832 Didymium spongiosum 289992 Evosea other_Eukaryota 237 6.53e-58   NTclustered gi|2161226356|gb|MZ313554.1| 289992 g8346 i0 82.836 6.8731884057971 268 43 97 3 1 267 7072 6807 Mucilago crustacea 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 1897 237 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Didymiaceae Didymium Didymium spongiosum
24185587 24185587 PRJNA851399_P_NODE_4639_length_475_cov_7.748826_g4193_i0 PRJNA851399 4639 475 7.748826 36.8069235 Didymium 5792 Evosea other_Eukaryota 606 7.869999999999996e-169   NTclustered gi|34979685|gb|AY321111.1| 246608 g4193 i0 89.813 95.7642105263158 481 37 100 10 1 475 1249 1723 Didymium sp. E2/8 small subunit ribosomal RNA gene, partial sequence blastn 45488 606 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Didymiaceae Didymium Didymium sp. E2/8
29139515 29139515 PRJNA851399_P_NODE_37529_length_162_cov_0.902655_g37076_i0 PRJNA851399 37529 162 0.902655 1.4623011 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 47.8 2.1e-4   NR XP_004335984.1 1257118 g37076 i0 53.7 0.759259259259259 41 19 75.9 0 125 3 923 963 XP_004335984.1 ubiquitin domain containing protein [Acanthamoeba castellanii str. Neff] diamond 123 47.8 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
31382310 31382310 PRJNA851399_P_NODE_28256_length_166_cov_0.871795_g27803_i0 PRJNA851399 28256 166 0.871795 1.4471797 Acytostelium subglobosum LB1 1410327 Evosea other_Eukaryota 65.1 1.73e-10   NR XP_012757426.1 1410327 g27803 i0 41.8 3.92168674698795 55 32 99.4 0 166 2 214 268 XP_012757426.1 hypothetical protein SAMD00019534_026740 [Acytostelium subglobosum LB1] diamond 651 65.1 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Acytostelium Acytostelium subglobosum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;