RNAquarium Metadata Server
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contig_metadata

16 rows where bioproject = "PRJNA849822" and tax_phylum = "Tubulinea"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 16 ✖

tax_clade 1

bioproject 1

  • PRJNA849822 · 16 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
838774 838774 PRJNA849822_P_NODE_7521_length_558_cov_1.484536_g7349_i0 PRJNA849822 7521 558 1.484536 8.28371088 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 569 1.2299999999999996e-157   NTclustered gi|909719647|gb|KT185627.1| 5778 g7349 i0 85.231 24.6111111111111 562 73 100 8 1 558 25835 26390 Vermamoeba vermiformis isolate BCP-EM3VF21-2 mitochondrion, complete genome blastn 13733 569 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
3389233 3389233 PRJNA849822_P_NODE_15483_length_369_cov_1.844595_g15309_i0 PRJNA849822 15483 369 1.844595 6.80655555 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 499 1.04e-136   NTclustered gi|146335208|gb|EF216680.1| 5778 g15309 i0 91.105 1.00542005420054 371 29 100 4 1 369 1418 1786 Hartmannella vermiformis transketolase mRNA, complete cds blastn 371 499 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
3389260 3389260 PRJNA849822_P_NODE_18723_length_334_cov_1.754789_g18549_i0 PRJNA849822 18723 334 1.754789 5.86099526 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 424 5.79e-114   NTclustered gi|909719645|gb|KT185625.1| 5778 g18549 i0 89.412 1.01796407185629 340 30 100 4 1 334 1018 679 Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 340 424 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
4666992 4666992 PRJNA849822_P_NODE_15384_length_370_cov_2.942761_g15210_i0 PRJNA849822 15384 370 2.942761 10.8882157 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 483 1.05e-131   NTclustered gi|292559443|ref|NC_013986.1| 5778 g15210 i0 95.38 57.3054054054054 303 14 82 0 68 370 20055 20357 Hartmannella vermiformis mitochondrion, complete genome blastn 21203 483 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
5941839 5941839 PRJNA849822_P_NODE_29745_length_268_cov_1.200000_g29571_i0 PRJNA849822 29745 268 1.2 3.216 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 198 2.9799999999999998e-46   NTclustered gi|909719647|gb|KT185627.1| 5778 g29571 i0 83.258 85.25 221 31 81 5 23 238 28119 27900 Vermamoeba vermiformis isolate BCP-EM3VF21-2 mitochondrion, complete genome blastn 22847 198 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
7611593 7611593 PRJNA849822_P_NODE_4086_length_791_cov_18.732591_g3923_i0 PRJNA849822 4086 791 18.732591 148.17479481 Vermamoeba 1260114 Tubulinea other_Eukaryota 1406 0   NTclustered gi|909719645|gb|KT185625.1| 5778 g3923 i0 98.736 88.8445006321112 791 10 100 0 1 791 5689 4899 Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 70276 1406 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
11042185 11042185 PRJNA849822_P_NODE_17249_length_349_cov_1.753623_g17075_i0 PRJNA849822 17249 349 1.753623 6.12014427 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 442 1.6699999999999993e-119   NTclustered gi|89357437|gb|DQ407656.1| 5778 g17075 i0 93.046 1.73065902578797 302 21 87 0 48 349 1 302 Hartmannella vermiformis chitinase-like protein cluster A mRNA, partial cds blastn 604 442 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
13592403 13592403 PRJNA849822_P_NODE_3871_length_816_cov_3.577389_g3712_i0 PRJNA849822 3871 816 3.577389 29.19149424 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 1203 0   NTclustered gi|62910949|gb|AY925001.1| 5778 g3712 i0 96.311 4.125 732 27 90 0 2 733 732 1 Hartmannella vermiformis Rpl7A mRNA, partial cds blastn 3366 1203 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
14866611 14866611 PRJNA849822_P_NODE_27192_length_279_cov_2.786408_g27018_i0 PRJNA849822 27192 279 2.786408 7.77407832 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 99 3.25e-16   NTclustered gi|89357437|gb|DQ407656.1| 5778 g27018 i0 100 0.189964157706093 53 0 19 0 1 53 358 410 Hartmannella vermiformis chitinase-like protein cluster A mRNA, partial cds blastn 53 99 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
16141221 16141221 PRJNA849822_P_NODE_10553_length_458_cov_2.774026_g10380_i0 PRJNA849822 10553 458 2.774026 12.70503908 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 697 0   NTclustered gi|909719645|gb|KT185625.1| 5778 g10380 i0 94.105 1 458 27 100 0 1 458 666 209 Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 458 697 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
16141299 16141299 PRJNA849822_P_NODE_21013_length_316_cov_1.283951_g20839_i0 PRJNA849822 21013 316 1.283951 4.05728516 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 435 2.5100000000000003e-117   NTclustered gi|88601123|gb|DQ390348.1| 5778 g20839 i0 91.456 1 316 27 100 0 1 316 361 46 Hartmannella vermiformis lactate dehydrogenase-like protein mRNA, partial cds blastn 316 435 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
18689788 18689788 PRJNA849822_P_NODE_10115_length_470_cov_1.934509_g9942_i0 PRJNA849822 10115 470 1.934509 9.0921923 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 473 8.229999999999999e-129   NTclustered gi|88601207|gb|DQ384272.1| 5778 g9942 i0 91.988 0.717021276595745 337 27 72 0 134 470 14 350 Hartmannella vermiformis unknown mRNA blastn 337 473 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
19965010 19965010 PRJNA849822_P_NODE_216_length_2608_cov_3.486391_g193_i0 PRJNA849822 216 2608 3.486391 90.92507728 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 1234 0   NTclustered gi|421976355|gb|JQ519494.1| 5778 g193 i0 94.71 63.1288343558282 794 42 30 0 452 1245 1 794 Vermamoeba vermiformis clone JG10.150_g4 elongation factor 2 alpha gene, partial cds blastn 164640 1234 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
19965076 19965076 PRJNA849822_P_NODE_28816_length_272_cov_1.371859_g28642_i0 PRJNA849822 28816 272 1.371859 3.73145648 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 398 2.7799999999999997e-106   NTclustered gi|146335208|gb|EF216680.1| 5778 g28642 i0 93.609 0.977941176470588 266 17 98 0 1 266 316 581 Hartmannella vermiformis transketolase mRNA, complete cds blastn 266 398 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
21240633 21240633 PRJNA849822_P_NODE_22537_length_305_cov_1.681034_g22363_i0 PRJNA849822 22537 305 1.681034 5.1271537 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 436 6.719999999999999e-118   NTclustered gi|66270666|gb|AY950658.1| 5778 g22363 i0 92.459 1.95409836065574 305 23 100 0 1 305 324 20 Hartmannella vermiformis Nop58p mRNA, partial cds blastn 596 436 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
27970880 27970880 PRJNA849822_P_NODE_26605_length_282_cov_1.492823_g26431_i0 PRJNA849822 26605 282 1.492823 4.20976086 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 160 1.9e-43   NR ABD62815.1 5778 g26431 i0 81.7 0.98936170212766 93 17 98.9 0 2 280 351 443 ABD62815.1 mitochondrial single-subunit RNA polymerase [Vermamoeba vermiformis] diamond 279 160 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;