RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA849822" and tax_phylum = "Rhodothermota"

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tax_superkingdom 1

tax_phylum 1

  • Rhodothermota · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA849822 · 4 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28476160 28476160 PRJNA849822_P_NODE_43666_length_237_cov_2.548780_g43492_i0 PRJNA849822 43666 237 2.54878 6.0406086 Rhodothermaceae bacterium 2026787 Bacteria Bacteria 44.7 0.00542   NR MCA1802895.1 2026787 g43492 i0 45 1.0126582278481 40 22 50.6 0 235 116 122 161 MCA1802895.1 tetratricopeptide repeat protein [Rhodothermaceae bacterium] diamond 240 44.7 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rhodothermaceae   Rhodothermaceae bacterium
28602542 28602542 PRJNA849822_P_NODE_7827_length_545_cov_1.387712_g7655_i0 PRJNA849822 7827 545 1.387712 7.5630304 Rhodothermaceae bacterium RA 1779382 Bacteria Bacteria 90.5 1.49e-17   NR ARA92020.1 1779382 g7655 i0 33.7 3.1045871559633 181 115 99.1 3 4 543 269 445 ARA92020.1 alkaline phosphatase [Rhodothermaceae bacterium RA] diamond 1692 90.5 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rhodothermaceae   Rhodothermaceae bacterium RA
30939792 30939792 PRJNA849822_P_NODE_38694_length_247_cov_0.896552_g38520_i0 PRJNA849822 38694 247 0.896552 2.21448344 Rhodothermaceae bacterium 2026787 Bacteria Bacteria 95.5 4.16e-21   NR MXW84010.1 2026787 g38520 i0 56.3 0.97165991902834 80 32 97.2 2 3 242 281 357 MXW84010.1 2-aminoethylphosphonate--pyruvate transaminase [Rhodothermaceae bacterium] diamond 240 95.5 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rhodothermaceae   Rhodothermaceae bacterium
31160394 31160394 PRJNA849822_P_NODE_34095_length_252_cov_1.558659_g33921_i0 PRJNA849822 34095 252 1.558659 3.92782068 Rhodothermia bacterium 2497633 Bacteria Bacteria 53.9 1.17e-6   NR HLE57871.1 2497633 g33921 i0 42.9 4.85714285714286 84 39 98.8 3 250 2 57 132 HLE57871.1 NAD(P)H-binding protein [Rhodothermia bacterium] diamond 1224 53.9 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia       Rhodothermia bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;