RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA849822", tax_phylum = "Kitrinoviricota" and tax_superkingdom = "Viruses"

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tax_superkingdom 1

  • Viruses · 4 ✖

tax_phylum 1

  • Kitrinoviricota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA849822 · 4 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7216741 7216741 PRJNA849822_P_NODE_26_length_4288_cov_2.997628_g24_i0 PRJNA849822 26 4288 2.997628 128.53828864 Potexvirus trifolii 3433859 Viruses Viruses 5304 0   NTclustered gi|2273760991|gb|OL472250.1| 12188 g24 i0 88.995 22.9221082089552 4289 470 100 2 1 4288 3 4290 MAG: White clover mosaic virus isolate TUR20SW polyprotein, 25 kDa triple gene block protein 1, 12 kDa triple gene block protein 2, and 7 kDa triple gene block protein 3 genes, complete cds; and coat protein gene, partial cds blastn 98290 5304 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Alphaflexiviridae Potexvirus Potexvirus trifolii
18689946 18689946 PRJNA849822_P_NODE_27855_length_276_cov_2.044335_g27681_i0 PRJNA849822 27855 276 2.044335 5.6423646 Potexvirus trifolii 3433859 Viruses Viruses 427 3.61e-115   NTclustered gi|1078555000|dbj|LC190455.1| 12188 g27681 i0 94.565 35.231884057971 276 15 100 0 1 276 155 430 White clover mosaic virus CP gene for coat protein, complete cds, isolate: Namwon blastn 9724 427 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Alphaflexiviridae Potexvirus Potexvirus trifolii
22911143 22911143 PRJNA849822_P_NODE_36038_length_250_cov_0.881356_g35864_i0 PRJNA849822 36038 250 0.881356 2.20339 Cucumovirus 12304 Viruses Viruses 359 1.19e-94   NTclustered gi|124294729|gb|EF202595.1| 12305 g35864 i0 92.742 99.2 248 18 99 0 3 250 354 107 Cucumber mosaic virus isolate Tsh segment RNA1, complete sequence blastn 24800 359 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Bromoviridae Cucumovirus Cucumovirus CMV
25064761 25064761 PRJNA849822_P_NODE_2380_length_1067_cov_2.573441_g2254_i0 PRJNA849822 2380 1067 2.573441 27.45861547 Potexvirus trifolii 3433859 Viruses Viruses 1352 0   NTclustered gi|1843793423|gb|MN399742.1| 12188 g2254 i0 89.493 24.0552952202437 1066 108 99 4 1 1064 4225 5288 White clover mosaic virus isolate Kreis Stormarn_18 RNA replication protein, triple gene block protein 1, triple gene block protein 2, triple gene block protein 3, and coat protein genes, complete cds blastn 25667 1352 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Alphaflexiviridae Potexvirus Potexvirus trifolii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;