RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA849822" and tax_phylum = "Candidatus Hydrogenedentota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Hydrogenedentota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA849822 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5941729 5941729 PRJNA849822_P_NODE_15085_length_374_cov_3.428571_g14911_i0 PRJNA849822 15085 374 3.428571 12.82285554 Candidatus Hydrogenedentota bacterium 2030809 Bacteria Bacteria 212 3.0099999999999997e-66   NR RME93434.1 2030809 g14911 i0 83.3 0.962566844919786 120 20 96.3 0 374 15 185 304 RME93434.1 MAG: adenosylhomocysteinase, partial [Candidatus Hydrogenedentota bacterium] diamond 360 212 1 Bacteria FCB group Pseudomonadati Candidatus Hydrogenedentota         Candidatus Hydrogenedentota bacterium
28421448 28421448 PRJNA849822_P_NODE_15826_length_365_cov_1.335616_g15652_i0 PRJNA849822 15826 365 1.335616 4.8749984 Bacteria 2 Bacteria Bacteria 148 9.94e-40   NR MCC6793816.1 2030809 g15652 i0 58.8 11.6054794520548 119 48 97.8 1 363 7 244 361 MCC6793816.1 aminotransferase class V-fold PLP-dependent enzyme [Candidatus Hydrogenedentota bacterium] diamond 4236 149 0.993288590604027 Bacteria FCB group Pseudomonadati Candidatus Hydrogenedentota         Candidatus Hydrogenedentota bacterium
28516031 28516031 PRJNA849822_P_NODE_27407_length_279_cov_0.834951_g27233_i0 PRJNA849822 27407 279 0.834951 2.32951329 Pseudomonadati 3379134 Bacteria Bacteria 96.7 6.39e-21   NR RME92109.1 2030809 g27233 i0 49.5 3.91397849462366 91 46 97.8 0 274 2 568 658 RME92109.1 MAG: hypothetical protein D6767_03920 [Candidatus Hydrogenedentota bacterium] diamond 1092 97.4 0.992813141683778 Bacteria FCB group Pseudomonadati Candidatus Hydrogenedentota         Candidatus Hydrogenedentota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;