RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA849822", tax_kingdom = "Thermotogati" and tax_phylum = "Synergistota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Synergistota · 3 ✖

tax_kingdom 1

  • Thermotogati · 3 ✖

bioproject 1

  • PRJNA849822 · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12317790 12317790 PRJNA849822_P_NODE_27930_length_276_cov_1.458128_g27756_i0 PRJNA849822 27930 276 1.458128 4.02443328 uncultured Dethiosulfovibrio sp. 185448 Bacteria Bacteria 54.7 0.007   NTclustered gi|2621705290|emb|OY763420.1| 185448 g27756 i0 100 0.105072463768116 29 0 11 0 205 233 2057251 2057223 MAG: uncultured Dethiosulfovibrio sp. isolate 94f88398-021e-4021-9552-bf231e535e7d genome assembly, chromosome: 1 blastn 29 54.7 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Dethiosulfovibrionaceae Dethiosulfovibrio uncultured Dethiosulfovibrio sp.
27402709 27402709 PRJNA849822_P_NODE_39603_length_246_cov_0.901734_g39429_i0 PRJNA849822 39603 246 0.901734 2.21826564 Synergistaceae bacterium 2053624 Bacteria Bacteria 53.9 1.68e-6   NR MDR2137471.1 2053624 g39429 i0 47.2 1.45121951219512 53 20 54.9 2 140 6 23 75 MDR2137471.1 TerD family protein [Synergistaceae bacterium] diamond 357 53.9 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Synergistaceae   Synergistaceae bacterium
30497398 30497398 PRJNA849822_P_NODE_43713_length_236_cov_2.067485_g43539_i0 PRJNA849822 43713 236 2.067485 4.8792646 Synergistaceae bacterium 2053624 Bacteria Bacteria 42.7 0.0341   NR MCE5200888.1 2053624 g43539 i0 36 0.635593220338983 50 32 63.6 0 17 166 136 185 MCE5200888.1 1,4-alpha-glucan branching protein GlgB [Synergistaceae bacterium] diamond 150 42.7 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Synergistaceae   Synergistaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;