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contig_metadata

16 rows where bioproject = "PRJNA849822", tax_kingdom = "Pseudomonadati" and tax_phylum = "Campylobacterota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 16 ✖

tax_kingdom 1

  • Pseudomonadati · 16 ✖

bioproject 1

  • PRJNA849822 · 16 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9766776 9766776 PRJNA849822_P_NODE_39888_length_246_cov_0.901734_g39714_i0 PRJNA849822 39888 246 0.901734 2.21826564 Wolinella succinogenes 844 Bacteria Bacteria 449 6.74e-122   NTclustered gi|34482172|emb|BX571657.1| 844 g39714 i0 99.593 2 246 1 100 0 1 246 49659 49904 Wolinella succinogenes, complete genome; segment 1/7 blastn 492 449 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Wolinella Wolinella succinogenes
12317803 12317803 PRJNA849822_P_NODE_29870_length_267_cov_1.742268_g29696_i0 PRJNA849822 29870 267 1.742268 4.6518555599999996 Helicobacter pylori 210 Bacteria Bacteria 54.7 0.007   NTclustered gi|2642434087|gb|CP078476.1| 210 g29696 i0 94.286 0.741573033707865 35 2 13 0 108 142 1074690 1074724 Helicobacter pylori strain HpGP-MMR-011 chromosome, complete genome blastn 198 54.7 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
16141346 16141346 PRJNA849822_P_NODE_26653_length_282_cov_1.330144_g26479_i0 PRJNA849822 26653 282 1.330144 3.75100608 Wolinella succinogenes 844 Bacteria Bacteria 516 7.67e-142   NTclustered gi|34483865|emb|BX571662.1| 844 g26479 i0 99.645 2 282 1 100 0 1 282 309828 310109 Wolinella succinogenes, complete genome; segment 6/7 blastn 564 516 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Wolinella Wolinella succinogenes
22515457 22515457 PRJNA849822_P_NODE_39018_length_247_cov_0.896552_g38844_i0 PRJNA849822 39018 247 0.896552 2.21448344 Wolinella succinogenes 844 Bacteria Bacteria 451 1.88e-122   NTclustered gi|296081|emb|X65189.1| 844 g38844 i0 99.595 3.27125506072874 247 1 100 0 1 247 1628 1382 W.succinogenes genes hydA, hydB, hydC for hydrogenase blastn 808 451 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Wolinella Wolinella succinogenes
27055001 27055001 PRJNA849822_P_NODE_15262_length_372_cov_1.625418_g15088_i0 PRJNA849822 15262 372 1.625418 6.04655496 Campylobacterota bacterium 2026809 Bacteria Bacteria 101 9.289999999999999e-24   NR MEA3522995.1 2026809 g15088 i0 48 1.98387096774194 123 59 97.6 5 3 365 91 210 MEA3522995.1 hemolysin III family protein [Campylobacterota bacterium] diamond 738 101 1 Bacteria   Pseudomonadati Campylobacterota         Campylobacterota bacterium
27876131 27876131 PRJNA849822_P_NODE_17345_length_348_cov_1.665455_g17171_i0 PRJNA849822 17345 348 1.665455 5.7957834 Campylobacterota bacterium 2026809 Bacteria Bacteria 94.4 1.71e-20   NR MCL4431196.1 2026809 g17171 i0 57.6 0.732758620689655 85 29 67.2 2 114 347 209 293 MCL4431196.1 hypothetical protein [Campylobacterota bacterium] diamond 255 94.4 1 Bacteria   Pseudomonadati Campylobacterota         Campylobacterota bacterium
27970892 27970892 PRJNA849822_P_NODE_38405_length_247_cov_1.362069_g38231_i0 PRJNA849822 38405 247 1.362069 3.36431043 Desulfurella amilsii 1562698 Bacteria Bacteria 112 9.4e-27   NR WP_086034043.1 1562698 g38231 i0 61 14.9392712550607 82 31 99.6 1 246 1 458 538 WP_086034043.1 AMP-binding protein [Desulfurella amilsii] diamond 3690 112 1 Bacteria   Pseudomonadati Campylobacterota Desulfurellia Desulfurellales Desulfurellaceae Desulfurella Desulfurella amilsii
28160565 28160565 PRJNA849822_P_NODE_33905_length_253_cov_0.866667_g33731_i0 PRJNA849822 33905 253 0.866667 2.19266751 Poseidonibacter antarcticus 2478538 Bacteria Bacteria 69.7 3.57e-12   NR WP_162984614.1 2478538 g33731 i0 55.1 0.818181818181818 69 31 81.8 0 40 246 61 129 WP_162984614.1 GAG-pre-integrase domain-containing protein, partial [Poseidonibacter antarcticus] diamond 207 69.7 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Poseidonibacter Poseidonibacter antarcticus
28476158 28476158 PRJNA849822_P_NODE_41746_length_243_cov_2.323529_g41572_i0 PRJNA849822 41746 243 2.323529 5.64617547 Poseidonibacter antarcticus 2478538 Bacteria Bacteria 111 2.7000000000000003e-28   NR WP_162984614.1 2478538 g41572 i0 63 1 81 29 98.8 1 2 241 100 180 WP_162984614.1 GAG-pre-integrase domain-containing protein, partial [Poseidonibacter antarcticus] diamond 243 111 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Poseidonibacter Poseidonibacter antarcticus
28705497 28705497 PRJNA849822_P_NODE_12187_length_422_cov_1.561605_g12013_i0 PRJNA849822 12187 422 1.561605 6.5899731 Campylobacterales 213849 Bacteria Bacteria 114 7.75e-28   NR WP_317937250.1 201 g12013 i0 46 12.063981042654 126 60 89.6 2 382 5 157 274 WP_317937250.1 phosphotransferase [Campylobacter lari] diamond 5091 115 0.991304347826087 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter lari
28728755 28728755 PRJNA849822_P_NODE_37347_length_249_cov_0.886364_g37173_i0 PRJNA849822 37347 249 0.886364 2.20704636 Helicobacter pylori 210 Bacteria Bacteria 101 1.01e-25   NR WP_304476977.1 210 g37173 i0 96.2 0.63855421686747 53 2 63.9 0 91 249 48 100 WP_304476977.1 hypothetical protein, partial [Helicobacter pylori] diamond 159 101 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
29021494 29021494 PRJNA849822_P_NODE_39788_length_246_cov_0.901734_g39614_i0 PRJNA849822 39788 246 0.901734 2.21826564 Sulfurospirillum 57665 Bacteria Bacteria 134 2.2899999999999998e-38   NR MBE0497547.1 2268180 g39614 i0 79.3 2 82 17 100 0 1 246 54 135 MBE0497547.1 thiamine-phosphate kinase [Campylobacterales bacterium] diamond 492 134 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales     Campylobacterales bacterium
29991788 29991788 PRJNA849822_P_NODE_18071_length_341_cov_0.847015_g17897_i0 PRJNA849822 18071 341 0.847015 2.88832115 Poseidonibacter antarcticus 2478538 Bacteria Bacteria 155 3.21e-45   NR WP_162984614.1 2478538 g17897 i0 67.3 0.967741935483871 110 35 95.9 1 1 327 114 223 WP_162984614.1 GAG-pre-integrase domain-containing protein, partial [Poseidonibacter antarcticus] diamond 330 155 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Poseidonibacter Poseidonibacter antarcticus
30402939 30402939 PRJNA849822_P_NODE_27773_length_277_cov_1.147059_g27599_i0 PRJNA849822 27773 277 1.147059 3.17735343 Sulfuricurvum sp. 2025608 Bacteria Bacteria 42.4 0.0458   NR WP_295063667.1 2025608 g27599 i0 29.5 0.953068592057762 88 60 93.1 1 275 18 74 161 WP_295063667.1 histidine phosphatase family protein [Sulfuricurvum sp.] diamond 264 42.4 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Sulfurimonadaceae Sulfuricurvum Sulfuricurvum sp.
31002876 31002876 PRJNA849822_P_NODE_27134_length_280_cov_1.130435_g26960_i0 PRJNA849822 27134 280 1.130435 3.165218 Campylobacterota bacterium 2026809 Bacteria Bacteria 43.1 0.0381   NR MCL4431196.1 2026809 g26960 i0 78.3 0.246428571428571 23 5 24.6 0 3 71 282 304 MCL4431196.1 hypothetical protein [Campylobacterota bacterium] diamond 69 43.1 1 Bacteria   Pseudomonadati Campylobacterota         Campylobacterota bacterium
32173218 32173218 PRJNA849822_P_NODE_33478_length_253_cov_0.866667_g33304_i0 PRJNA849822 33478 253 0.866667 2.19266751 Sulfurospirillum tamanense 2813362 Bacteria Bacteria 156 1.25e-44   NR WP_205458288.1 2813362 g33304 i0 90.4 0.984189723320158 83 8 98.4 0 251 3 211 293 WP_205458288.1 dehypoxanthine futalosine cyclase [Sulfurospirillum tamanense] diamond 249 156 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Sulfurospirillaceae Sulfurospirillum Sulfurospirillum tamanense

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;